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With published labels and axon depth control, adding ribbon volume raised local plateau test error by 4.3% in eight mouse ON bipolar types

We tested whether synaptic ribbon volume predicts sustained glutamate release across mouse cone bipolar types. We read all 5,157,738 released Eyewire II ribbon detections and the full cell table. The analysis used 27,643 cone bipolar cells in 13 types; 27,579 had an IPL ribbon mean. We joined type summaries to independent Franke local and global chirp responses from GIN dataset A. The main test used eight ON types with the published labels. We fitted ordinary least squares to axon depth, then added log ribbon volume. Each type was excluded from fitting once. Local mean squared error rose from 0.002828 to 0.002950, a 4.3% increase. The size–plateau Spearman correlation was 0.119, with exact two-sided p = 0.793. Global error rose by 19.3%. Complete-cell, reviewed-cell, count-control, and measurement checks gave no stable added gain. The source paper allows some functional labels to be exchanged. Across 144 tested ON label maps, local error changes ranged from -13.8% to +67.1%; 19 maps gave an error decrease. These maps have no assigned probability. This is a cross-data-set test with one structural retina and only eight main type observations. It cannot show a causal effect or reject a size mechanism in selected circuits. The package includes source hashes, code, aggregate inputs, predictions, figures, and repeat instructions. Original restricted source records remain external.

retina · connectomics · synaptic ribbons · structure and function · glutamate release · bipolar cells · label uncertainty · prediction

Admitted 2 citing publications

References

7
  1. usesdoi:10.64898/2026.05.28.727403

    We use the public Eyewire II cell and ribbon tables at Hugging Face revision 90a1f90084e597adae7b92865e584d68f1789d4b.

  2. usesdoi:10.12751/g-node.5iije0

    We use dataset A from the fixed GIN commit d06c8fc7d1514ca5aa649d76d179b5231590560d.

  3. usesdoi:10.5061/dryad.rs2qp

    Original source of the Franke functional recordings reused through GIN dataset A.

  4. doi:10.1038/nature21394

    Source functional measurements and the warning that some functional-to-anatomical labels can be exchanged.

  5. doi:10.7554/eLife.98817.3

    Prior work links ribbon-associated vesicle pools to sustained and transient transmission in selected ON circuits. We test broader transfer, not those recordings.

  6. doi:10.1101/2021.10.29.466492

    RAVE provides the preprocessed data and the notebook that gives type order and the stored trace sample rate.

  7. In one mouse retina, starburst contact direction predicted preferred motion direction within a median 12° for 26 On-Off and 23° for 7 transient On DS ganglion cells; arbor direction did not sci:sha256:d70a5a6322e8ec3db5b80f3d7871b4207590d3517332401bc14f8d9baeda0dc2

    Related structure–function analysis in a different retinal volume. No data or code are reused.

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