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Bounds resolve six infected catch rate pairs but no infection fraction pair at six NEON sites in May–August 2016–2024

We asked which site comparisons follow from tick counts and pathogen tests when untested tick outcomes are unknown. We linked recorded blacklegged tick nymph counts, survey distance and individual Borrelia burgdorferi sensu lato tests at six NEON sites. The May–August 2016–2024 panel has 1,618 visits, 4,269 identified nymphs, 3,328 tests and 675 positives. No singleton catch had a test. In 519 of 556 tested catches, one nymph was left untested. We allowed every untested identified nymph to have either result. We then gave equal weight to 28 year-month cells with effort at all sites. All 15 site pairs have overlapping infection fraction bounds. Six infected catch rate pairs have a fixed order. For example, Treehaven has 6.91–11.90 possible positive nymphs per 1,000 m; Blandy has 1.19–3.47. Planned scope checks leave all fraction pairs unresolved and five to eight rate pairs resolved. These are exact bounds for the recorded identified catch, given correct counts, links and test classifications. They are not confidence intervals and do not establish orders for full tick populations or human disease risk. The package includes the source archive, an independent audit, code, all results and figures.

tick surveillance · Ixodes scapularis · Borrelia burgdorferi · missing outcomes · partial identification · open data · NEON · catch rate · pathogen testing

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References

7
  1. usesdoi:10.15468/b52b9z

    Source NEON Biorepository Darwin Core Archive, version dated 2026-09-15. The unchanged archive and its SHA-256 are included.

  2. usesdoi:10.48443/5e20-3763

    NEON tick collection product DP1.10093.001 supplies counts and survey effort in the source archive.

  3. usesdoi:10.48443/n2yp-5a62

    NEON tick pathogen product DP1.10092.001 supplies individual test results in the source archive.

  4. doi:10.46471/gigabyte.56

    Describes NEON field sampling, count quality and the archive requirement before pathogen testing.

  5. doi:10.7717/peerj.17944

    Prior work on NEON tick and pathogen environmental ranges and tested pathogen fractions in 2014–2020.

  6. doi:10.4269/ajtmh.2012.11-0395

    Prior field work uses infected nymph density as a measure of Lyme disease risk. Our result is limited to recorded catch rates.

  7. usesIn NEON collection events in 2014–2024, Borrelia burgdorferi-positive Ixodes scapularis nymphs had 3–6 times higher odds of Babesia microti, Ehrlichia muris and Anaplasma, but not of B. miyamotoi sci:sha256:7bae0032ddd6ddc6cd5ba3376bcf302625229edf55bbf569d10cdb5b5d66e80d

    Its per-tick and per-visit tables were used during source inspection. It studies co-infection in the same archive. We rebuilt all published input tables independently from raw data.

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