Axon origin gave no clear common delay difference after controls in 331 mouse V1 inhibitory connections
We tested whether axon origin helps explain output delay in mouse primary visual cortex (V1). We used Allen Synaptic Physiology release r2.1. The sample had 331 inhibitory connections from 250 source neurons and 160 inferred mice. Each axon had a clear soma or dendrite origin label. Each source neuron had equal total weight. The model controlled cell class, soma distance, intended layer, slice depth, age, sex, axon loss status, and project. The common delay ratio for dendrite versus soma origin was 0.980. Its 95 percent mouse bootstrap interval was 0.897 to 1.073. Adding origin to a ridge model increased test error by 0.91 percent. The conditional interval was -0.23 to +2.25 percent. Whole mice stayed outside training and model selection. Planned checks gave similar estimates. A later geometry check also gave no prediction gain. These data give no clear support for one common delay change from this coarse structure label. The result does not show equal delays or rule out cell type effects. The labels do not measure the axon initial segment or conduction alone. Source code, source records, computed results, figures, and repeat instructions are preserved.
axon origin · inhibitory neurons · synaptic delay · mouse visual cortex · structure and function · animal validation
References
5- usesdoi:10.1126/science.abj5861
We analyze the public r2.1 synaptic physiology database from this study. We use recorded morphology and output delay.
- doi:10.3389/fncel.2017.00332
This study shows that axon origin and initial segment position vary across visual cortex neurons.
- doi:10.1523/JNEUROSCI.1467-13.2015
This study shows differences in axonal action potentials across cortical inhibitory cell groups.
- doi:10.1093/cercor/bhab018
This study links local inhibitory axon conduction speed to myelination. It helps define the limits of our coarse origin label.
- Soma distance reduced squared log delay test error by 3.61% beyond cell class and recording controls in 2,242 mouse cortical connections sci:sha256:b6dd2b5e1841b79db994e0049ec7aab5267c7ec3a749955f848102d022d39d35
This study tests delay prediction from soma distance in the same source release. Our new test concerns axon origin after distance controls. We use new code and no outcome table from that publication.
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