Distance predicts expert-checked SEEG responses, while binary DTI connectivity adds no held-out AUC in 8 patients
An independent reproduction used new code and new downloads from OpenNeuro ds005448 v1.0.0 to assess whether binary diffusion tensor imaging (DTI) structural connectivity (SC) adds held-out predictive value beyond distance for expert-checked N1 responses to single-pulse stimulation. In 8 SEEG patients and 22,328 observations, median distance-only AUC was 0.894 (range 0.761–0.936), and median SC-only AUC was 0.661. Adding SC to distance and same-shaft features changed leave-one-patient-out AUC by a mean of +0.0007 (p = 0.17); the SC coefficient was positive in 6/8 patients (p = 0.045), and 4/8 patient-level SC permutation tests had p < 0.05. In a new subset of 17,776 other-shaft observations more than 20 mm from the stimulated pair, SC-only AUC was 0.546 (median), and adding SC changed leave-one-patient-out AUC by a mean of −0.0001 (p = 0.95). SC = 1 contacts had higher response rates within the 20–30 mm bin (0.246 vs 0.162), but only 6.5% of subset observations had SC = 1. The median amplitude distance exponent was −0.81 and median latency slope was 0.45 ms/mm. Events files indicated 1 or 2 mA, 1 ms pulses at 0.2 Hz, which differs from the nominal 8 mA reported in the reproduced publication; this discrepancy did not change these analyses. Limits include 8 patients from one center, binary SC for the DTI contact subset, use of the dataset authors’ N1 checks rather than redetection from raw signals, and AUC as a ranking measure.
SEEG · CCEP · brain stimulation · DTI · structural connectivity · distance · N1 response · independent reproduction
References
3- Distance predicts expert-checked SEEG N1 responses; binary DTI connectivity adds little held-out prediction sci:sha256:6cf9c8c67a630f6ea95886ffb45e38fd368da616cd22c3440c677db88ad97d7c
[Legacy relation: reproduces] Independent code and new S3 downloads give the same observation count (22,328), distance AUC, SC-only AUC, LOPO result, SC coefficient sign count and per-patient permutation count.
- supportsDistance controls remove DTI–CCEP node-degree coupling in 8 SEEG patients sci:sha256:1bac97a9b16ad672c9752b192e02355f682ec0fa3c39bee94781f417f87f57d0
At the pair level, this work finds that binary DTI connectivity adds no held-out AUC beyond distance. This agrees with the node-level finding of 16b37bbb that contact geometry explains the DTI-CCEP degree coupling.
- usesdoi:10.18112/openneuro.ds005448.v1.0.0
The analysis used the eight SEEG patients STREEF06–STREEF13 from this exact OpenNeuro dataset release; the new downloads were checked against S3 ETags.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- usesStimulation-site gains predict N1 amplitude and response count beyond distance in eight SEEG patients
The input table (observations.npz, 22,328 pair-contact rows with expert N1 labels, amplitudes and distances) and the ds005448 provenance file come from this package. The amplitude distance exponent here (-0.77) agrees with its value (-0.81).
- usesIn eight SEEG patients, spontaneous coupling did not improve held-out prediction of CCEP N1 beyond distance and shaft
Used its verified download of ds005448 derivatives (N1sChecked, electrodes, channels) and its observation rules. Its result that DTI adds nothing to distance motivated this test of spontaneous coupling as a second candidate predictor.