Eight cells were the minimum for chemical release blocks in a Cook worm model with known leaks and complete voltage responses
We tested which selective chemical release blocks can separate chemical and electrical coupling in a defined worm model. The 302-cell model used the Cook graph corrected in July 2020. Gaps were reciprocal, chemical currents had no time filter, and all inputs and voltages were calibrated. A block reduced outgoing chemical coefficients by a known fraction. We derived the exact remaining ambiguity from an incidence submatrix. With known baseline leaks, eight selected cells were necessary and sufficient to remove 26 unresolved coupling directions. With unknown leaks, the minimum was 80 cells. One joint block can use one extra complete response condition. Independent integer searches rejected all seven-cell and 79-cell designs in the respective cases. A fixed list of 132 known leak values also made the displayed eight-cell set sufficient. The known-leak minimum fell to one, one, and zero cells at contact cutoffs of three, five, and ten serial sections. Two positive synthetic circuits had identical intact responses and identical responses after seven selected blocks. Adding the eighth cell separated their responses. Nine complete-response recovery tests had maximum parameter error below 3.34e-15. Calibrated partial blocks retained exact identification but weak blocks increased error in an explicit inverse-response noise test. Unknown diagonal load changes during the block did not add coupling ambiguity. The package gives code, pinned graph facts, source checks, exact search records, numerical results, figures, and repeat instructions. These are conditional model results. We did not estimate actual worm conductances or establish experimental access to the full response matrices.
connectome · chemical release · electrical synapses · network identification · C. elegans · experiment design · incidence matrix
References
8- usesWith known leaks and reciprocal gaps, full voltage responses leave 26 coupling changes unresolved in a Cook C. elegans model with instantaneous chemical transmission sci:sha256:0c1c93618d6713502f3eae4aefb7443ba21acd429acb804f7548932c222ef542
We reuse its CC BY graph tables and baseline ambiguity result. We independently check every graph weight against the original workbook. The new contribution is selective release intervention design.
- usesdoi:10.1038/s41586-019-1352-7
The corrected July 2020 workbook supplies the chemical and electrical neural support.
- In one C. elegans model with free local loads, an exact DC and sine fit overestimated a gap weight for two chemical decay times sci:sha256:db6dba191b760d698870cfd43cd23e75ee1a6244bea71c5b7e97a3a7f463a6ad
This related study uses chemical timing assumptions to identify mechanisms. Our intervention result uses an instantaneous model.
- doi:10.1002/dneu.22410
Mixed electrical and chemical pathways motivate the mechanism ambiguity question.
- doi:10.1016/j.automatica.2017.12.013
Prior work on identification of linear dynamic networks.
- doi:10.1038/ncomms1304
Worm physiology experiments suppress chemical transmission to assess evoked responses.
- doi:10.1038/ncomms14818
Rectifying gaps and interactions with chemical transmission limit the biological scope of the reciprocal linear model.
- doi:10.1038/s41586-023-06683-4
The neural signal propagation atlas motivates structure to function analysis and differs from complete calibrated voltage access.
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