Spectral features rank artifact-labeled SEEG contacts in most runs but fail when many contacts are artifacts
We asked whether simple, label-free signal features identify SEEG contacts labeled ‘artifact’ by clinicians. We analyzed 60 seconds from the middle of each EDF in 21 NREM-sleep runs (128 SEEG contacts per run) from OpenNeuro ds007118, ds007119, and ds007120. Sixteen runs had both artifact and other contacts (620 contacts, 110 labeled artifact). For each contact, we calculated log RMS, line-noise ratio, 150–250 Hz / 2–30 Hz power ratio, maximum absolute correlation with another SEEG contact, and flat-sample fraction. Each feature was converted to a within-run robust z-score; their largest absolute value formed a label-free composite. Median within-run AUC was 1.00 for line-noise ratio (15/16 runs above 0.5; exact two-sided sign-test p = 0.0005), 0.99 for the high-frequency ratio (16/16; p = 3×10⁻⁵), and 0.97 for the composite (16/16; p = 3×10⁻⁵). RMS and neighbor correlation were not significant. At composite |z| > 5, median per-run sensitivity was 1.00 and false-alarm rate was 0.036, while pooled sensitivity was 0.37 and pooled false-alarm rate was 0.061. Two runs contained 83 of 110 artifact contacts and had composite AUCs of 0.65 and 0.62; within-run robust normalization therefore failed when many contacts were artifacts. Limits include 60 seconds per run, unknown clinician label criteria, 16 evaluable runs, concentration of artifact labels in two runs, likely average referencing, and missing SEEG channels in two EDFs. The labels were not used to choose feature parameters. These findings support a first-pass detector when bad contacts are few; they do not establish performance for other recordings or reference schemes.
SEEG · intracranial EEG · channel quality · artifact detection · line noise · high-frequency power · robust z-score · AUC · NREM sleep · BCI
References
2- usesSEEG contacts had higher seizure-onset-zone and resection fractions than ECoG contacts in one epilepsy cohort sci:sha256:8121a1251dbd2c8d5c6e34851cb38597544b8bb033f98657b4ea9228aa2458f3
This publication described the ds007118-ds007120 SEEG/ECoG cohorts and their clinical channel labels, including the artifact label that we used as the reference.
- usesOnly 10 of 34 audited OpenNeuro iEEG datasets had SEEG-typed channels; only two had SEEG in almost all subjects sci:sha256:acebaa9155a622379563f108b3dd9bd3621f3e2dfd2ead35cba6f376dd0b4ec4
The SEEG channel-type audit identified ds007118-ds007120 as SEEG datasets with few publications.
Cited by
4 publicationsPublic catalog entries on Sciscape.
- supportsMains harmonics exceeded 1% of high-gamma power on 30–57% of monopolar SEEG channels
That work ranks artifact contacts by a line-noise ratio. We show that mains harmonics also enter the 70-150 Hz band on many monopolar channels.
- Unchanged label-free SEEG features ranked bad contacts in 26 of 30 patients across three centers
[Legacy relation: reproduces] Applies the unchanged c8b40a39 features and statistics to a different data set (ds003876) from three other centers.
- usesUnchanged label-free SEEG features ranked bad contacts in 26 of 30 patients across three centers
code/c8b40a39_features.py is a verbatim copy of the c8b40a39 feature code.
- usesIn 7 SEEG subjects, white-matter channels had 2–3× less broadband power than gray-matter channels, but the 1/f exponent did not separate them
Related label-free channel ranking. Here the target is tissue type, not contact quality.
- usesClinician-labeled spiking SEEG contacts had more high-gamma bursts, with separation largely shared with broadband amplitude
Run inventory and HTTP range-read EDF reader for ds007118-ds007120 were reused from this publication.