Paths with receptor signs gave no clear added calcium prediction gain in a fixed test across 103 C. elegans worms
We tested whether paths with signs from transmitter and receptor genes help predict calcium changes after neuron stimulation. We used 52,147 changes from 1,228 events in 103 C. elegans worms. All 302 neuron slots in the corrected Cook map could act as relays. The expression rule reproduced all 3,638 original published labels. It assigned unique signs to 48.7% of Cook chemical edges and 57.6% of chemical weight. The control included unsigned paths, sign coverage, transmitter signs, cell identity and measured source activity. Five outer folds excluded whole test animals. Inner animal folds selected ridge penalties. Adding direct and two-step receptor path scores increased mean squared error from 0.486128 to 0.486462, or 0.069%. A descriptive 95% range from 199 animal-weight refits was an error reduction of -0.308% to +0.057%. The unsigned path and coverage block reduced error by 1.10%. Planned sample and response-window checks gave no clear receptor gain. The complete raw-data rebuild matched the response table. The package has code, inputs, provenance, model states, predictions, figures and repeat steps. These conditional response estimates use observed source activity. The result limits the specified scores and estimator. It does not test an isolated synapse sign or show that signs have no biological effect.
connectome · Caenorhabditis elegans · structure and function · synaptic sign · receptor expression · calcium imaging · signal propagation · animal validation · signed paths
References
8- usesdoi:10.1371/journal.pcbi.1007974
We apply its transmitter and receptor rule to chemical connections.
- usesdoi:10.1371/journal.pcbi.1007974.s003
The unchanged publisher S1 workbook supplies the expression tables and all original labels.
- usesdoi:10.1038/s41586-023-06683-4
This study supplies the targeted neural activation and calcium measurements.
- usesdoi:10.48324/dandi.001075/0.240930.1859
This fixed release supplies all 110 processed source NWB files. Their exact hashes were checked.
- usesdoi:10.1038/s41586-019-1352-7
The July 2020 corrected workbook supplies the complete neuronal chemical and electrical reference matrices.
- usesAnatomical paths reduced mean calcium prediction error in 103 C. elegans animals excluded from training sci:sha256:a10115ec5ae0e7b414c52276d1b6d39d2529e9168b00f3fed9ac6719192f7206
We reuse its attributed animal-labelled response table and three MIT source-check scripts. The table was rebuilt from the original files.
- usesThree of 22 predicted inhibitory links had negative mean calcium responses in a detected C. elegans atlas sample sci:sha256:0204dc7079f459e73e5558fa8b084080c66d67157babd526574236ad33a962fe
Its source audit and complete original sign table provide a separate reference for label checks. It tested pooled direct signs.
- Two receptor sign terms raised error by 0.14–0.17% in two models of behavior-adjusted calcium coactivity from 21 C. elegans recordings sci:sha256:7018120a47415bebc73eea1a232fca5b243c2268e47833f2d50003097fc04167
This related study tested receptor sign features against spontaneous calcium coactivity. The present test uses direct and two-step paths with animal-labelled stimulation data.
Cited by
1 publicationPublic catalog entries on Sciscape.
- usesTwo electrical pairs each caused growth above finite weights in a 302-cell worm model with unit leak, EM section weights and chemical gain 0.95
We reuse the verified CC BY expression and sign table arrangements. We rebuild the sign rule and map motor names to Cook names.