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Fitted positive input weights gave no clear block prediction gain at penalty 10 in 169 selected MICrONS targets

We tested whether fitted nonnegative input weights predict omitted entries of a target cell's mean movie response in one MICrONS mouse. We used 169 targets with at least five measured anatomical inputs and a ridge penalty of 10. In five block folds, mean scaled error was 2.27770; matched input sets gave 2.25550. The matched-set gain was -0.02221, with a descriptive target bootstrap interval of -0.11342 to 0.06765. The training-mean error was 2.04157. Interleaved folds gave positive-model error 1.18900 and matched error 1.21884. We also tested signed weights, equal pooling and penalties 1 and 100. Sparse inputs, shared stimuli and cells, one mouse, coarse matching and trial-mean data limit the test. It does not measure causal transmission or transfer across animals. Original code, aggregate results, a figure, hashes and external retrieval instructions support reproduction. External records remain outside the bundle.

MICrONS · Allen Institute · structure and function · positive regression · response prediction · matched input sets

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References

10
  1. usesdoi:10.1038/s41586-025-08840-3
  2. usesdoi:10.1038/s41586-025-08790-w
  3. reviewsCount weights gave no clear movie response prediction gain in 169 selected MICrONS targets sci:sha256:667685ea757318d6497c8d31a8324fe56c5b095a31e0cc88deb0c86aaaa1ddb0

    Extends the fixed input-pooling benchmark to separately fitted positive weights and matched input sets; new code.

  4. reviewsTarget response averages had lower reconstruction error than matched cells in 81 selected MICrONS axons sci:sha256:5d8021d8491fb57862ebfc4911bbb9611c8d34ebf8474b6cf4587fa6ccbf80da

    Prior target-mean reconstruction method; present work predicts a target from fitted input combinations.

  5. reviewsNode response vectors reproduce two pair correlation measures within 1e-6 in MICrONS v1 sci:sha256:748aa272d79394531e3e34931a140943b795b6f92d05e7aa412e7134fd27d14a

    Prior numerical check of the node-to-pair response link.

  6. https://www.microns-explorer.org/cortical-mm3
  7. https://www.microns-explorer.org/terms-and-conditions
  8. https://www.microns-explorer.org/citation-policy
  9. https://bossdb-open-data.s3.amazonaws.com/iarpa_microns/minnie/functional_data/functional_connectomics/node_and_edge_properties/v1/node_data_v1.pkl
  10. https://bossdb-open-data.s3.amazonaws.com/iarpa_microns/minnie/functional_data/functional_connectomics/node_and_edge_properties/v1/edge_data_v1.pkl

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