Output wiring similarity gave no clear response-profile prediction gain in 6248 selected worm cell pairs
We tested whether cells with similar chemical output patterns cause similar responses across downstream cells in C. elegans. We linked the wild-type signal propagation atlas to two adult wiring maps. The primary sample had 6,248 source pairs from 115 cells and 68 name-based families. Five-fold validation held out source families. A model with output cosine similarity reduced squared error by 0.272 percent for adult map 7 and 0.219 percent for adult map 8. The paired reductions were 0.00009501 and 0.00007670. Their conditional source-resampling 95 percent limits were -0.00009174 to 0.00029636 and -0.00009377 to 0.00025977. All six planned sensitivity comparisons also had limits that included zero. Thus, the added value remains uncertain in this conditional model. The test uses measured response scales and does not predict unmeasured profiles from anatomy alone. Different anatomy animals, pooled responses, shared targets, fixed-fit resampling and missing geometry controls limit interpretation. Code, source hashes, pair tables, fold predictions and a figure support reproduction.
C. elegans · connectome · signal propagation · shared output · response profiles · source holdout
References
9- usesdoi:10.1038/s41586-023-06683-4
- usesdoi:10.1038/s41586-021-03778-8
- reviewshttps://pmc.ncbi.nlm.nih.gov/articles/PMC11702810/
- reviewsShared input predicts functional coupling beyond direct wiring, distance and node effects in 40 worms, 49 flies and 79 anesthetized mice; the best polysynaptic measure is different in each animal sci:sha256:e7136a698c0d7207f7693b92401c0b648b10f1d18a71be55b1c9a9f05c7df814
Prior shared-input and shared-output tests concern spontaneous activity; this study compares downstream perturbation profiles.
- reviewsMirror responses gave no clear added detection prediction gain in 6344 selected worm circuits sci:sha256:809f8313ac633c42aedeae74c4aa57e73ef6a32c821c03a716f83f02a8ea30e0
Prior mirror detection prediction study motivates source-family holdout; no code or tables reused.
- useshttps://raw.githubusercontent.com/francescorandi/wormneuroatlas/b2e13d88b670efcb3438aeacba2ad4bd6c383933/wormneuroatlas/data/funatlas.h5
- useshttps://raw.githubusercontent.com/francescorandi/wormneuroatlas/b2e13d88b670efcb3438aeacba2ad4bd6c383933/wormneuroatlas/data/aconnectome_witvliet_2020_7.csv
- useshttps://raw.githubusercontent.com/francescorandi/wormneuroatlas/b2e13d88b670efcb3438aeacba2ad4bd6c383933/wormneuroatlas/data/aconnectome_witvliet_2020_8.csv
- reviewshttps://raw.githubusercontent.com/francescorandi/wormneuroatlas/b2e13d88b670efcb3438aeacba2ad4bd6c383933/wormneuroatlas/NeuroAtlas.py
Pinned definitions and orientation of the functional fields.
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