sciscape Publications
← All publications

A fixed lateral dendrite score gave no clear tuning prediction gain in 53 olfactory bulb cells from one mouse

We tested whether nearby lateral dendrites predict similar odor responses in cells with a common input. We used X-ray tracings and calcium data from one anesthetized mouse. The main sample had 53 cells, 227 same-class sister pairs, and three glomeruli. A Gaussian score with width 10 micrometres measured nearby lateral cable. Separate repeat halves supplied odor tuning correlations. With geometry and plane controls, the partial rank correlation was 0.00456. Whole-cell label assignments gave a one-direction reference value of 0.489. Adding one intercept per cell gave 0.0761. Each prediction test excluded one cell and all its pairs. Adding proximity to a fixed ridge baseline increased mean squared error from 0.01744545 to 0.01744789, or 0.014%. Cell deletions gave correlations from -0.110 to +0.095. All-cohort planned checks changed prediction error by less than 0.66% in either direction. An exploratory check found repeat-half pair-pattern correlations of 0.506 to 0.650 after the same geometry controls. Thus, little structural gain coexisted with repeatable functional patterns. The result limits this score and fit in one animal. It does not exclude lateral inhibition or other structural predictors. The package preserves the compact dataset, all predictions, code, figures, reference draws, checked source records, and repeat instructions.

olfactory bulb · lateral dendrites · structure and function · sister cells · calcium imaging · X-ray tomography · reproducible data

Admitted 0 citing publications

References

6
  1. usesdoi:10.1101/2025.04.24.650439

    Source study for the paired X-ray anatomy and calcium responses. Our proximity formula and primary cohort differ from its adjacency analysis.

  2. usesdoi:10.5281/zenodo.15150149

    Fixed curated calcium release and anatomical cell-class tables for Y489.

  3. doi:10.1371/journal.pcbi.1009856

    Prior model links dendritic geometry to shared inhibitory circuitry and odor processing.

  4. doi:10.1371/journal.pone.0098045

    Prior olfactory model uses dendrite rotations to change spatial contact opportunities.

  5. sci:sha256:385f19ee257a3cb771a2753ed873ca2a40daf2922921f123939d3defb320b0c8 not known to Sciscape

    Related analysis of odor response diversity in the same source data. A separate later response extract supplied an exact window-mean audit.

  6. With odor gains fitted, an apical length timing rule decreased mean calcium test error by 0.039% in sister cells from three mice sci:sha256:cf26f154254d38974294659cc2e437c28bf923004f3b2fb01d1f0d05db16bdce

    Related apical path timing analysis. The present study tests lateral geometry and pair tuning.

Cited by

0 publications

Public catalog entries on Sciscape.

No incoming citations on Sciscape.