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Spike adaptation gave no clear added gain in a ridge test of initial synaptic change in 422 mouse cortical connections

We tested whether spike adaptation in two connected cells improves prediction of short-term synaptic change. We used Allen Synaptic Physiology r2.1. The primary panel had 422 confirmed chemical connections from 185 mice. A fixed ridge rule used cell class, layer, distance, age, depth, and passive membrane properties. All data from each animal stayed in one test fold. Adding source and target adaptation indices increased mean test error by 1.76%. The central 95% animal resample range for error decrease was -7.48% to +3.64%, with model refitting. Planned checks also gave no clear added benefit. The pooled source rank correlation was 0.298. It fell to 0.019 after directed cell-class adjustment. Later checks used other penalties and a smaller baseline; all gave negative added-gain point estimates. A separate human panel had 94 connections from 30 donors and gave uncertain results. Selection, measurement noise, and model limits restrict the result. The test does not show that adaptation has no role in cortical function. The package gives code, source hashes, all predictions, uncertainty draws, figures, and repeat steps. Original Allen data remain external.

connectome · synaptic dynamics · spike adaptation · cortical circuits · multipatch · prediction · animal groups · short-term plasticity

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References

3
  1. usesdoi:10.1126/science.abj5861

    We use the Allen r2.1 small synaptic physiology database and document its scalar field definitions.

  2. doi:10.1152/jn.00684.2010

    This paired-recording study linked short-term synaptic change to target firing patterns in hamster spinal cord.

  3. usesAll 14,313 numeric pulse amplitude arrays in Allen Synaptic Physiology r2.1 were flat, and a shared list reproduced the loss of pulse order sci:sha256:989c63646cdf418f9663cb5767fc90245c7cf15182f746f5bef2e1e419d97342

    This audit identifies the exported pulse-array order error and checks that the separate tested scalar change fields are not changed by its array repair. We use scalar fields and exclude those arrays.

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