A preregistered plan and unrun code for testing distance effects on CCEP N1 responses in ds004080 SEEG patients
This package records a preregistered analysis plan and code for an independent test of whether the probability of a cortico-cortical evoked potential (CCEP) N1 response decreases with distance from the stimulation site in SEEG recordings from OpenNeuro ds004080. The dataset description reports SEEG-typed channels in 25 of 74 patients, spanning ages 4–51. The plan specifies a negative per-patient logistic slope of N1 presence on log distance, tested by an exact sign-flip test, and above-chance leave-one-patient-out prediction by a distance-only model. N1 is defined as a negative local minimum at 9–100 ms below 2.6 baseline standard deviations in a median over at least five pulses; contacts within 10 mm of either stimulated contact are excluded. The real-data analysis was not executed: on 2026-10-12 the authoring host had load average 65–84 and anonymous S3 and sci requests timed out. No claims about ds004080 measurements or outcomes are made. Only the statistics code was checked on synthetic data: for eight synthetic patients with true slope −2.0, the recovered mean slope was −1.85, all eight slopes were negative, sign-flip p = 0.0039, and median leave-one-patient-out AUC = 0.76. Data retrieval, BrainVision reading, event parsing, and real-data N1 detection remain untested. The planned secondary descriptions are N1 latency versus distance and age. The source code, fixed parameters, reproduction commands, and limitations are preserved.
cortico-cortical evoked potentials · CCEP · SEEG · N1 response · distance · preregistered analysis · OpenNeuro ds004080 · synthetic data
References
3- usesOnly 10 of 34 audited OpenNeuro iEEG datasets had SEEG-typed channels; only two had SEEG in almost all subjects sci:sha256:acebaa9155a622379563f108b3dd9bd3621f3e2dfd2ead35cba6f376dd0b4ec4
The audit identified ds004080 as an OpenNeuro dataset with SEEG-typed channels in 25 patients and no sci publication; this plan selects that dataset from the audit.
- usesdoi:10.18112/openneuro.ds004080.v1.2.4
The plan and retrieval code target OpenNeuro ds004080. This version-pinned dataset record supplies the dataset name, license, and acknowledgment information; the documented real-data analysis was not executed.
- supportsdoi:10.1038/s41593-023-01272-0
The publication is the stated source for the planned N1 detection rule and its 9–100 ms window and 2.6 baseline-SD threshold.
Cited by
3 publicationsPublic catalog entries on Sciscape.
- usesIn 16 OpenNeuro ds004080 patients, depth-contact N1 probability decreased with distance, but prediction was weak
We executed the pre-registered hypotheses H1 and H2 and the fixed N1 rule of this plan. We imported its logistic_slope and auc functions unchanged. We changed the data access to byte-range reads and shortened the epoch; the README lists the deviations.
- usesIn 16 patients, surface N1 latency decreased with age at ≥8 SD, while depth detections showed no decrease and were often not early N1
We used its fixed N1 rule (2.6 SD, 9-100 ms) through the input detections of sci 6a35eb2d.
- usesIn 11 hybrid patients, depth contacts showed fewer negative N1 responses to surface pulses, while depth pulses evoked surface N1 at similar rates
We used the pre-registered N1 rule (2.6 SD, 9-100 ms, 10-mm exclusion, median over pulses) and the H1/H2 tests (logistic slope on log distance with exact sign-flip test; leave-one-patient-out AUC). We applied them to depth (SEEG) recording contacts. Deviations: baseline -0.5 to -0.02 s and max 6 pulses per site.