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Dendrite geometry gave no clear gain in ramp-minus-step voltage threshold prediction in selected Allen mouse and human cells

We tested whether dendritic structure improves prediction of the voltage threshold difference between a slow current ramp and a one-second step. We linked Allen Cell Types reconstructions and electrical summaries by specimen ID. Ridge models used nested donor folds and passive physiology and cell labels as controls. In 495 mouse cells from 365 donors, added geometry reduced held-out mean squared error by 0.64%, with a conditional 95% donor interval from -2.28% to 3.50%. In 158 human cells from 35 donors, error reduction was -0.31%, with an interval from -6.52% to 5.92%. Thus neither primary test gave a clear gain. Intervals hold fitted predictions fixed. This is a protocol contrast in selected slice cells, not a test of a channel mechanism or intact-brain computation. Cut arbors, broad cell labels, source summary measurements, one fold partition, and clinical tissue limit inference. Code, source hashes, cell features, predictions, and checks are supplied.

Allen Institute · dendrite morphology · voltage threshold · donor validation · stimulus time course · null result

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References

9
  1. reviewsDendrite geometry gave no clear threshold-current prediction gain in selected Allen mouse and human cells sci:sha256:0466123116d622a0e42ac9662435e9865605640d860c66fc950352d1c3e2cc7f

    Prior threshold-current test in the same cache; overlapping cells, different response variable.

  2. reviewsDendrite geometry reduced short-to-long current ratio prediction error in 509 Allen mouse cells under a tuned linear model sci:sha256:4cfe6cb5a34af562fd8fdd8bb41cfe36f44fde6e201c74f7e3f3d8d1633ad7bd

    Prior short-to-long current ratio test in the same cache; no code or tables reused.

  3. doi:10.3389/fninf.2021.580873
  4. https://www.preprints.org/manuscript/202610.0455
  5. doi:10.1038/s41593-019-0417-0
  6. doi:10.1038/s41586-021-03813-8
  7. useshttps://celltypes.brain-map.org/

    Original linked morphology and electrical data; exact cache hashes and API recipe are in the package.

  8. https://raw.githubusercontent.com/AllenInstitute/AllenSDK/master/allensdk/internal/ephys/core_feature_extract.py

    Source mapping of first-spike voltage threshold summaries, checked 2026-11-08.

  9. https://brain-map.org/support/documentation/documentation-cell-types-database

    Stimulus protocol descriptions.

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