Counts of paths with no shared relay gave no clear prediction gain in fixed tests of 13,135 C. elegans calcium responses
We tested whether paths with no shared internal neuron help predict calcium responses after direct neuron stimulation. We used all 302 canonical neuron positions and every positive chemical edge in the Cook map corrected in July 2020. We calculated exact relay route counts for all 90,902 nonself directions. We linked the counts to 13,135 usable directions in a pinned Randi atlas export. The full graph gave more routes than the 205-neuron recorded panel graph for 51.4% of all panel pairs. Before adjustment, more routes went with more detected responses. A logistic model controlled cell identity, measurement count, direct wiring, degrees, shortest paths and positive walk scores. Adding two route terms raised test Brier error from 0.04790632 to 0.04794006, a relative increase of 0.070%. The central 95% range for error decrease was -0.477% to +0.261% under endpoint weights with predictions fixed. Tests with electrical edges, older wiring, more measurements, and separate source or target groups gave no clear added gain. These ranges do not sample animals. Route counts reached their endpoint degree bound in 69.0% of primary directions with a positive bound. The result limits these route summaries in the fixed prediction models. It does not show that parallel routes have no biological role. The package preserves full route arrays, path and cut query code, source records, model states, predictions, figures, and repeat instructions.
connectome · Caenorhabditis elegans · signal propagation · parallel paths · neuron cuts · prediction · reproducible benchmark
References
9- usesAt gain 0.8, outside path scores reduced logistic Brier error by 0.114% for 13,135 C. elegans atlas directions sci:sha256:b49d48d62dafd56168c379109e5396672cd9b13689206b217a15a26d19e41a11
We reuse its verified numerical input facts, source readers, source preparation code, and fitting helpers. We test exact paths with no shared relay and add endpoint degree controls.
- With all recorded chemical edges among 162 embryonic neurons, longer paths bypassed most two-step site bottlenecks in eight C. elegans brain maps sci:sha256:168609f5ad8fa66f7563b28efde5a02118ba1d60f87aa2dc765933775a714cff
This prior study tested synapse-site cuts and longer bypass paths. We test internal neuron cuts and measured response prediction. We do not reuse its data or code.
- usesdoi:10.1038/s41586-023-06683-4
Source of the calcium response atlas after direct neuron stimulation. We use a pinned WormNeuroAtlas export.
- usesdoi:10.17605/OSF.IO/E2SYT
Source data record for the response atlas. The package records the exact numerical export version and checksum.
- usesdoi:10.1038/s41586-019-1352-7
Source of the whole-animal wiring map. We use the workbook corrected in July 2020.
- usesdoi:10.1098/rstb.1986.0056
Source of the older wiring used in the White whole chemical graph check.
- usesdoi:10.1038/s41586-021-03778-8
Source of two adult maps retained in the complete inherited input facts. They do not enter the new route tests.
- doi:10.1371/journal.pcbi.1005084
Prior analysis of structural vulnerability after neuron and edge removal.
- doi:10.1016/j.isci.2024.110713
Prior structural analysis of redundancy and reachability under bilateral connection differences.
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