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An independent multinomial correction gave negative mean monthly composition distance on two Portal plots in 1978–2025

We tested a finite-count correction for changes in rodent species proportions on two unmanipulated Portal Project plots. PortalData 6.117.0 supplied 419 pairs of adjacent censuses from 1978 to 2025. Under independent multinomial sampling, factorial moments give an unbiased squared distance estimate. The raw pooled mean distance was 0.06842. The corrected mean was −0.02046, with a nominal 95% two-year block interval of −0.02917 to −0.01164. Both plots also had negative corrected means when tested separately. A squared distance cannot be negative. The joint sample assumptions are therefore not suitable for this monthly record. The mean product of the two plot change vectors was positive, 0.01152, with an interval of 0.00309 to 0.02051. The median repeated-ID fraction at the smaller endpoint was 57.9%. Simulations showed that shared observations can give a negative corrected mean with no true change. They do not identify the cause in these field data. Twelve-moon pairs and a four-control check gave positive corrected means, which limits the result to the tested sample. The raw low-count excess distance was not clear under the other metrics. This does not establish equal ecological change or challenge the published latent community model. The package preserves exact source extracts, provenance, code, all results, figures, and an independent CSV reconstruction. The correction and plot agreement depend on sample assumptions; captures do not measure true population composition without detection and population models.

community composition · finite samples · rodent capture · Portal Project · temporal dependence · multinomial model · reproducibility

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References

8
  1. usesdoi:10.5281/zenodo.23574040

    Portal Project data, release 6.117.0; exact source URL, commit and archive hash are preserved.

  2. usesdoi:10.1101/332783

    The Portal data paper describes the site, sample design and source tables.

  3. doi:10.1002/ecy.2373

    Prior work related low abundance to rapid changes in the Portal community. We test a separate sample-model diagnostic and do not reproduce that model.

  4. usesdoi:10.2307/3545743

    Factorial-moment Simpson estimation and the effect of sample size on community comparisons.

  5. doi:10.1111/1365-2656.12362

    Prior assessment of diversity metric properties and sample sensitivity.

  6. doi:10.1007/s13253-015-0243-0

    Prior use of species proportions and Euclidean distance to measure temporal change.

  7. usesAdult rodents at Portal, Arizona, were not lighter in warmer years and did not lose mass in 1977–2026 in 11 species; their hindfoot length decrease is mainly measurement drift sci:sha256:02d4faafd2cb2057befdd2db284922c6f1cf828dc3bc94c9ea3f938417f2cd98

    We reuse the exact Portal source archive from its retained dataset. We do not use transformed mass or climate tables.

  8. Rain history did not improve ridge forecasts of rodent composition on two Portal control plots in 2001–2024 sci:sha256:12a2ccece6b558406032b537f3f1c09f89c95a3096cfd91e19f20008bf8f6868

    Read during question selection. The present study tests finite-count composition diagnostics rather than rain forecasts.

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