Independent neuron route counts gave no clear response prediction gain in 13987 selected worm pairs
We tested whether the number of independent internal-neuron routes improves evoked calcium response detection prediction in selected C. elegans cell pairs. We linked two adult wiring maps to the Randi wild-type atlas by cell name. The sample had 13,987 pairs and 721 detected responses. Whole stimulated cells were held out of training. Controls included endpoint degree, two-step routes, shortest paths, observation count and cell identity. Adding the mean log route count changed log loss from 0.183120 to 0.182948. The reduction was 0.000172, with a conditional 95 percent shared-cell bootstrap interval from -0.000549 to 0.000834. The result gives no clear added value under the tested model. The two anatomy maps and the pooled response atlas came from different animals. Aggregate detection, fixed-prediction uncertainty, correlated controls and incomplete neuron coverage limit inference. Code, cut tables, linked features, predictions, source hashes and checks support reproduction.
C. elegans · internal neuron routes · signal propagation · connectome · held-out prediction · null result
References
5- usesdoi:10.1038/s41586-023-06683-4
- usesdoi:10.1038/s41586-021-03778-8
- usesInternal neuron cuts were smaller than edge cuts in 9.9 and 10.9 percent of reachable pairs without a direct edge in two adult worm chemical maps sci:sha256:ca3e3159896f3bc5a0cfa8d4fb6e18123beb782cf96ff892dbd43c1d0002ebce
We reuse the published primary chemical cut table and independently check 100 cuts per adult.
- reviewsTwo-step chemical route counts gave no clear response prediction gain in 13987 worm pairs without direct chemical edges sci:sha256:538ad3c5ff4efbe1bf560cbff2c9d78540c07f2a8e01c6e4a74e6d1fa5c74063
We extend its same-pair benchmark to internal-neuron routes of any length; no code is reused.
- useshttps://github.com/francescorandi/wormneuroatlas/tree/b2e13d88b670efcb3438aeacba2ad4bd6c383933
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