In four C. elegans maps with two-way electrical links, route length had rank correlations of 0.03–0.10 with fitted mean kernel peak time
We tested whether a short anatomical route marks an early peak in a fitted neural response. We used four C. elegans anatomy exports and a pinned WT signal propagation atlas. Chemical links kept their direction; electrical links could carry routes in both directions. All available neural relays were retained in each map. Edges were not pooled across maps. The main test had 594 detected, non-self entries with at least three finite trial amplitudes and a nonzero mean kernel. It excluded AWC and pharyngeal endpoints. Route length had a Spearman rank correlation of 0.0466 with fitted mean kernel peak time. Entries with one, two or three edges had median times of 0.44, 0.43 and 0.43 seconds. Adding chemical-only and combined shortest route terms to a fixed ridge model raised held-out log-time squared error from 0.18094975 to 0.18105042. The error reduction was -0.056%. Its central 95% group weight range was -1.00% to +1.18% of baseline error. The predictions stayed fixed; this range does not describe variation across animals. Across the four maps, rank correlations were 0.025-0.104 for 550-594 entries. None of 18 planned checks or one later panel check gave a positive lower weight-range limit. A clean run reproduced 115 result and figure files. Independent graph, decimal-kernel and saved-model checks passed. The package preserves code, input hashes, the derived benchmark, fitted models, predictions, weight draws and figures. The measure is the peak of the full exported mean kernel. It is not conduction delay or the source study's corrected rise time. Anatomy and imaging came from different animals, and the tests share one atlas.
Caenorhabditis elegans · connectome · signal propagation · transfer kernel · peak time · shortest path · electrical synapses · reproducible benchmark
References
7- usesdoi:10.1038/s41586-023-06683-4
We use the exported WT calcium response measurements and mean transfer kernels from this study.
- usesdoi:10.17605/OSF.IO/E2SYT
The pinned WormNeuroAtlas export derives from this signal propagation data set.
- usesdoi:10.1098/rstb.1986.0056
We use the whole-animal and L4 anatomy exports from this source.
- usesdoi:10.1038/s41586-021-03778-8
We use all available neural relays in the two adult head maps, with each map kept separate.
- supportsdoi:10.1103/6wgv-b9m6
This study compares anatomical and signaling modules and identifies a distinct pharyngeal module. We remove pharyngeal endpoints in the main test.
- supportsPharynx controls reduced the added prediction gain from indirect walks by 89% in a fixed C. elegans atlas test sci:sha256:3d17f027f5db904dad6c633521a74f387a32e9ff999808faaca428e78f85505d
This earlier atlas test found that pharynx controls changed the added gain from route terms. It supports our decision to exclude pharyngeal endpoints in the main test. We use new code and a different outcome.
- Stable chemical connections across eight C. elegans connectomes did not propagate optogenetic signals more often than variable connections at matched adult synapse count sci:sha256:5cbb4c1917dff79c9e9f17c6ff6ae5d0ba556de73d1a96c2f13df319c7fef4d0
This earlier test studies stable wiring and response detection. The present study tests fitted kernel peak time.
Cited by
1 publicationPublic catalog entries on Sciscape.
- supportsThe Cook whole-animal map gave no clear timing prediction gain over older wiring in a ridge test of 739 C. elegans kernels
Earlier work found weak path ordering of kernel peak time in the older maps. Our different timing measure and corrected Cook comparison retain weak prediction gains.