Cross-validation retained disjoint precision links in independent contact controls from 36 SEEG patients
Five-fold cross-validation retained disjoint precision links in independent contact controls from 36 public SEEG patients. The main test used 512 independent training samples. On average, 98.3% of disjoint pairs had an absolute fitted partial correlation of at least 0.05. The planned grid included zero penalty. A check added after inspection excluded zero and retained 94.9%. The model predicted separate test samples better than a model with independent bipolar outputs. The main mean gain was 0.222 nats per channel and sample. An exact four-contact calculation gave a removal penalty of 0.134 for equal variances. Source independence was imposed in these Gaussian controls. The results do not estimate false links in recorded neural signals. The package contains source records, covariance inputs, code, fold scores, selected models, checks, and reproduction instructions.
graphical lasso · precision matrix · partial correlation · bipolar subtraction · stereoelectroencephalography · SEEG · Gaussian controls · cross-validation · OpenNeuro
References
4- usesFull partial correlation remains between disjoint bipolar channels within chains in independent contact controls from 36 SEEG patients sci:sha256:23d190482e6bb3cf7f70ae441ca5a265027502b817887a7a55812008167715b9
Uses lossless contact covariance matrices, pinned raw ranges, metadata, and extraction code. Extends the independent contact precision controls to graphical lasso selection with separate validation samples.
- usesEdges that share a contact are more common among the strongest 5 percent of 1–80 Hz bipolar SEEG correlations in 36 epilepsy patients sci:sha256:7dc3370736cdefb57323429971522e882b644b700faccfda51b916b3d865f58f
Uses the original 36-patient OpenNeuro extraction and source terms retained in the later covariance package. This study uses the same cohort.
- usesdoi:10.18112/openneuro.ds004100.v1.1.3
Source contact variances and metadata came from the HUP iEEG Epilepsy Dataset, OpenNeuro ds004100 v1.1.3.
- doi:10.1093/biostatistics%2Fkxm045
Background reference for the graphical lasso method used in the exact four-contact calculation and benchmark.
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