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Apical area fraction gave no clear primary sag prediction gain in selected Allen mouse and human spiny cells

We tested whether the fraction of dendrite surface area on apical branches improves voltage-sag prediction after cell size, input resistance, recording voltage, and cell labels are known. We linked Allen Cell Types reconstructions and electrical summaries by cell ID. Whole donors were held out. In 234 mouse spiny cells from 173 donors, squared prediction error fell by 7.17%, but the 97.5% conditional donor interval for error reduction included zero. In 111 human spiny cells from 31 donors, error rose by 4.07%. The human interval was below zero. Larger model shrinkage gave a positive mouse sensitivity interval. Thus, this descriptor did not give a clear common gain under the primary model. The package supplies code, source hashes, derived cell features, predictions, donor scores, uncertainty draws, and a check script. Cut branches, radius errors, selected donors, incomplete cell-type controls, and intervals conditional on fitted predictions limit the result. The test does not establish an ion-channel mechanism or a rule for intact circuits.

Allen Institute · dendritic morphology · voltage sag · donor validation · null result

Admitted 4 citing publications

References

6
  1. usesdoi:10.1038/s41593-019-0417-0

    Source mouse morphology and physiology study.

  2. doi:10.1038/s41586-021-03813-8

    Allen human cortical cell-type study.

  3. doi:10.1016/j.cell.2018.08.045

    Direct human and rodent dendrite measurements give context for electrical compartmentalization.

  4. useshttps://celltypes.brain-map.org/
  5. useshttps://raw.githubusercontent.com/AllenInstitute/AllenSDK/v2.16.2/allensdk/ephys/ephys_extractor.py

    Source definition of voltage sag and the sweep-selection voltage.

  6. reviewsDendrite area improved response-time predictions in 158 selected Allen human cells sci:sha256:7a8d2fb1764d832b1d66d6e70fc250edd572b51a69785d6d69109c987cdc675d

    Prior campaign test of dendrite area and response time in the same cache. It motivated a test of apical allocation rather than total area. No code or numerical evidence was reused.

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