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Wiring from the previous light target gave no clear added prediction gain in a fixed ridge test across 36 C. elegans worms

We tested whether wiring from the previous light target helps predict the calcium response after the next pulse in C. elegans. We added exact pulse history to a signed matched-window dataset and checked the original processed files in a fixed DANDI release. The selected panel had 124 source switches in 36 worms and 2,786 downstream measurements. A fixed ridge test kept each test worm out of fitting and tuning. The model supplied cell labels, cell state, source activity, position and current-source wiring. Adding 18 terms for previous-source wiring raised mean test error by 0.40%. A central 95% range from 300 animal refits allowed a 2.13% error increase to a 0.77% decrease. The before-period test and five planned checks also gave no clear added gain. Most pulse gaps were near 30 seconds. Label and trace rules retained only 36 of 90 parent worms. The result limits this static prediction rule; it does not show that previous pulses have no biological effect. The package preserves the new event-linked table, code, provenance, model states, predictions, figures and repeat instructions.

connectome · Caenorhabditis elegans · signal propagation · stimulation history · calcium imaging · animal-separated prediction · reproducible dataset

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References

5
  1. usesSignals from other cells reduced prediction error before and after stimulation in fixed ridge tests across 90 C. elegans worms sci:sha256:4d9f17425466733b9ad479f48f60b855009c886a25a81eee77ab5d9e8e15a9a1

    We reuse its exact matched-window table and anatomical graph. We add the true previous pulse source and test its wiring after current-source controls.

  2. Wiring features reduced calcium response error by 1.17% beyond cell identity in a fixed test across 103 C. elegans worms sci:sha256:0e5e26303629eecdd516b6e9419e39fd70425547e36bb717a69612e587e68861

    This study supplies earlier animal-separated response prediction methods. The present response definition and selected panel differ.

  3. usesdoi:10.1038/s41586-023-06683-4

    This study provides the original neural stimulation and calcium measurements.

  4. usesdoi:10.48324/dandi.001075/0.240930.1859

    We check the fixed processed NWB files and extract the exact chronological previous source, trace summaries and pulse intervals.

  5. usesdoi:10.1038/s41586-019-1352-7

    The corrected July 2020 anatomical reference supplies the chemical and electrical graph facts through the signed parent dataset.

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