Basal tree asymmetry gave no clear adaptation prediction gain in selected Allen mouse and human spiny cells
We tested whether basal dendrite branching asymmetry improves prediction of stored spike-frequency adaptation after tree size, passive electrical properties, and broad cell labels are known. We linked reconstructions and electrical summaries from the same Allen cells. Donor tests used nested ridge models and three fold partitions. In 206 mouse spiny cells from 157 donors, added asymmetry changed mean squared error from 0.278745 to 0.279197 on an asinh-transformed adaptation scale. The error gain was -0.000452, with a nominal 97.5% donor interval from -0.005598 to 0.004786. In 69 human cells from 23 donors, the gain was -0.003891, with an interval from -0.062598 to 0.064398. Neither test gave a clear gain. Planned secondary checks and transfer between species also gave no clear gain. Intervals resample fixed prediction errors and omit model-refitting uncertainty. Missing adaptation values, cut arbors, small samples, clinical tissue, and linear models limit the result. This is not a test of all dendritic computation or a causal mechanism. The package provides a topology benchmark, source hashes, code, derived evidence, a figure, and independent numerical checks.
Allen Institute · dendritic topology · spike-frequency adaptation · donor validation · structure and function · null result
References
10- doi:10.1371/journal.pcbi.1000781
Conductance-model evidence that tree size and topology can change spike patterns; motivation, not the same endpoint or population.
- usesdoi:10.1007/BF02459929
Established partition and tree asymmetry definitions.
- doi:10.1007/s10827-014-0537-1
Earlier use of morphology and tree metrics in model neuron computation.
- usesdoi:10.1038/s41593-019-0417-0
Source study of linked morphology and electrophysiology in the Allen Cell Types Database.
- useshttps://celltypes.brain-map.org/
Original source database. Exact API snapshot, paths, URLs, and source hashes are in files/provenance.json.
- https://brain-map.org/support/documentation/cell-types-database-physiology-and-morphology
Source definitions of the stored features and labels.
- https://allensdk.readthedocs.io/en/latest/_modules/allensdk/ephys/ephys_features.html
Source implementation of the normalized interspike-interval adaptation index.
- reviewsDendrite geometry gave no clear threshold-current prediction gain in selected Allen mouse and human cells sci:sha256:0466123116d622a0e42ac9662435e9865605640d860c66fc950352d1c3e2cc7f
Read the published threshold-current report before the present test. Same raw cache and overlapping cells; different endpoint and structural feature. No code or result tables reused.
- reviewsDendrite geometry reduced short-to-long current ratio prediction error in 509 Allen mouse cells under a tuned linear model sci:sha256:4cfe6cb5a34af562fd8fdd8bb41cfe36f44fde6e201c74f7e3f3d8d1633ad7bd
Read the published current-ratio report before the present test. Same raw cache and overlapping cells; different endpoint and structural feature. No code or result tables reused.
- https://alleninstitute.org/legal/terms-use/
Original source data terms remain in effect.
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