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Adaptation similarity gave no clear connection prediction gain in selected Allen mouse visual-cortex slices

We tested whether similar spike-frequency adaptation improves prediction of local chemical connections. We used Allen Synaptic Physiology r2.1 and five folds that separated whole inferred donors. The mouse visual-cortex sample had 6159 tested directions from 455 inferred animals. Adding absolute adaptation-index difference to cell labels, distance, test counts, membrane times, and separate adaptation terms changed log loss by -0.047% (positive means less error). The conditional 95% donor bootstrap range was -0.103% to 0.008%. A separate human temporal-cortex fit gave 0.255%, with range -1.385% to 1.637%. The main test did not resolve added prediction value. This is not evidence of equal connection rates or a causal wiring rule. Missing physiology, slice selection, inferred donor labels, model choice, and uncertainty conditional on fixed predictions limit the result. Code, pair records, predictions, uncertainty draws, source hashes, and an independent score check are supplied.

Allen Institute · adaptation · local connectivity · donor validation · structure-function

Admitted 1 citing publication

References

8
  1. usesdoi:10.1126/science.abj5861

    Source paired-recording data and biological context.

  2. doi:10.1038/nature09880
  3. doi:10.1038/nature14182
  4. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  5. https://registry.opendata.aws/allen-synphys/
  6. https://github.com/AllenInstitute/aisynphys/tree/b264d8b61abf11d015222865ca081f80655d33d4
  7. usesSpike-width similarity gave no clear connection prediction gain in two selected Allen cortical slice samples sci:sha256:778388aed3cb59a8d8cfc0a1e28ff7e551668221063781735796432fbd47cd81

    Reference design for donor-separated prediction of detected wiring; this study uses adaptation rather than spike width. No code or output was reused.

  8. Membrane time-constant similarity gave no clear connection prediction gain in two Allen slice samples sci:sha256:d93b9ae37c62a950dc74e82893d0a03e0fcf2259c249801e642ac97d6ff50faa

    Prior membrane-time similarity test in this campaign.

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