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Rheobase contrast gave no clear connection direction prediction gain in three selected Allen slice groups

We tested whether the difference in firing threshold current adds a prediction of detected connection direction between two cortical neurons. We used Allen Synaptic Physiology r2.1 pairs with both directions tested and exactly one detected chemical connection. Five folds held out whole inferred donors. The base model used cell labels, input resistance, membrane time, spike width, and test effort. At ridge penalty 10, the added log rheobase contrast changed donor mean log loss by gains of 0.00172 in 59 human excitatory pairs, -0.00193 in 46 mouse excitatory pairs, and -0.01768 in 212 mouse inhibitory pairs. Conditional 98.33% donor bootstrap intervals were -0.02416 to 0.02965, -0.03923 to 0.03205, and -0.02951 to -0.00749. No group gave a clear gain. The mouse inhibitory loss was smaller and uncertain at penalty 100. The result concerns these fixed models and selected slice graphs. It does not show that excitability has no role in wiring. We supply source code, pair records, held-out predictions, uncertainty draws, a figure, and checks. Small samples, incomplete cell labels, detected-edge selection, inferred donor groups, and uncertainty conditional on fitted predictions limit inference.

Allen Institute · rheobase · connection direction · intrinsic excitability · donor validation · null result

Admitted 4 citing publications

References

8
  1. usesdoi:10.1126/science.abj5861

    Source study of the Allen slice connectivity and physiology data.

  2. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  3. https://registry.opendata.aws/allen-synphys/
  4. https://brain-map.org/support/documentation/synaptic-physiology-analysis-methods-quality-control
  5. useshttps://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/intrinsic.py

    Pinned field definitions, read from the shared source cache.

  6. reviewsMatched Allen slice pairs do not resolve a connection direction bias toward cells with intact apical dendrites sci:sha256:78db75af7974a5a0f0f922345249ce7174884d9195f0ec9ace5492f727e09b6f

    Prior paired direction audit; this test uses rheobase and conditional direction prediction.

  7. reviewsSpike-width similarity gave no clear connection prediction gain in two selected Allen cortical slice samples sci:sha256:778388aed3cb59a8d8cfc0a1e28ff7e551668221063781735796432fbd47cd81

    Prior width-similarity connection test; this test concerns signed rheobase contrast.

  8. reviewsMembrane time-constant similarity gave no clear connection prediction gain in two Allen slice samples sci:sha256:d93b9ae37c62a950dc74e82893d0a03e0fcf2259c249801e642ac97d6ff50faa

    Prior time-constant similarity test and donor grouping precedent.

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