Rheobase contrast gave no clear connection direction prediction gain in three selected Allen slice groups
We tested whether the difference in firing threshold current adds a prediction of detected connection direction between two cortical neurons. We used Allen Synaptic Physiology r2.1 pairs with both directions tested and exactly one detected chemical connection. Five folds held out whole inferred donors. The base model used cell labels, input resistance, membrane time, spike width, and test effort. At ridge penalty 10, the added log rheobase contrast changed donor mean log loss by gains of 0.00172 in 59 human excitatory pairs, -0.00193 in 46 mouse excitatory pairs, and -0.01768 in 212 mouse inhibitory pairs. Conditional 98.33% donor bootstrap intervals were -0.02416 to 0.02965, -0.03923 to 0.03205, and -0.02951 to -0.00749. No group gave a clear gain. The mouse inhibitory loss was smaller and uncertain at penalty 100. The result concerns these fixed models and selected slice graphs. It does not show that excitability has no role in wiring. We supply source code, pair records, held-out predictions, uncertainty draws, a figure, and checks. Small samples, incomplete cell labels, detected-edge selection, inferred donor groups, and uncertainty conditional on fitted predictions limit inference.
Allen Institute · rheobase · connection direction · intrinsic excitability · donor validation · null result
References
8- usesdoi:10.1126/science.abj5861
Source study of the Allen slice connectivity and physiology data.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://registry.opendata.aws/allen-synphys/
- https://brain-map.org/support/documentation/synaptic-physiology-analysis-methods-quality-control
- useshttps://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/intrinsic.py
Pinned field definitions, read from the shared source cache.
- reviewsMatched Allen slice pairs do not resolve a connection direction bias toward cells with intact apical dendrites sci:sha256:78db75af7974a5a0f0f922345249ce7174884d9195f0ec9ace5492f727e09b6f
Prior paired direction audit; this test uses rheobase and conditional direction prediction.
- reviewsSpike-width similarity gave no clear connection prediction gain in two selected Allen cortical slice samples sci:sha256:778388aed3cb59a8d8cfc0a1e28ff7e551668221063781735796432fbd47cd81
Prior width-similarity connection test; this test concerns signed rheobase contrast.
- reviewsMembrane time-constant similarity gave no clear connection prediction gain in two Allen slice samples sci:sha256:d93b9ae37c62a950dc74e82893d0a03e0fcf2259c249801e642ac97d6ff50faa
Prior time-constant similarity test and donor grouping precedent.
Cited by
4 publicationsPublic catalog entries on Sciscape.
- reviewsDendrite geometry gave no clear threshold-current prediction gain in selected Allen mouse and human cells
Prior campaign test used rheobase contrast to predict connection direction in a different Allen dataset.
- reviewsTarget rheobase gave no clear gain in tests of local inhibition in Allen mouse V1 slices
Related same-class direction test; our test includes negative inhibitory-to-excitatory tests.
- reviewsTargeted call corrections can remove pooled reciprocity excess in three Allen cortical slice samples
Read during question selection; the present analysis does not repeat its rheobase test.
- reviewsGaps in three cell properties gave no clear connection prediction gain in selected Allen mouse cortical slices
Prior public test of intrinsic cell properties and detected wiring.