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Two adult C. elegans chemical maps gave no clear gain over two early maps in a fixed test of 8,265 calcium response directions

We tested whether adult chemical wiring predicts adult calcium response detection better than early larval wiring. We used all eight Witvliet brain maps. The main comparison used two early and two adult maps, with all contacts among 162 embryonic brain neurons. We joined the graphs to the Randi wild-type signal propagation atlas. The test had 8,265 directed pairs and 600 detections at q < 0.05. Each pair had at least three finite stored response values. Fixed logistic models used chemical counts, normalized walks, input similarity, measurement count, soma distance, adult electrical counts, and neuron-class terms. Five folds excluded all fitting labels that involved a test source class. Adult Brier error was 0.056311, against 0.056633 for early maps. The reduction was 0.000322, or 0.57 percent. A descriptive central 95 percent class-weight range was -0.000456 to 0.001583. After adult synapse records were sampled to match early source counts, the reduction was 0.000082. Common controls had lower error than either chemical model, at 0.055928. A check with all 180 brain neurons gave a similar small difference. The evidence gives no clear adult-map prediction gain in these models. It does not show equal function across ages. Functional data came from adults only, and structural and functional animals differed. The package preserves code, source hashes, transformed inputs, models, predictions, sampling records, figures, and repeat instructions. All input hashes and 127 numerical output files passed a fresh-source repeat.

connectome · Caenorhabditis elegans · development · signal propagation · structure and function · optogenetics · prediction · synapse sampling

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References

6
  1. usesdoi:10.1038/s41586-021-03778-8

    We use the eight developmental brain reconstructions and the original neuron metadata at a pinned repository commit.

  2. usesdoi:10.1038/s41586-023-06683-4

    We use wild-type response detection facts and finite-value counts from the fixed WormNeuroAtlas 0.0.7.3 functional export.

  3. usesdoi:10.17605/OSF.IO/E2SYT

    This is the original functional study data record. Our exact analyzed export and hashes are specified separately.

  4. Stable chemical connections across eight C. elegans connectomes did not propagate optogenetic signals more often than variable connections at matched adult synapse count sci:sha256:5cbb4c1917dff79c9e9f17c6ff6ae5d0ba556de73d1a96c2f13df319c7fef4d0

    This study tested stable and variable chemical connection classes in the same functional atlas. We extend the question to age-specific graph prediction errors. We do not reuse its code or tables.

  5. usesPharynx controls reduced the added prediction gain from indirect walks by 89% in a fixed C. elegans atlas test sci:sha256:3d17f027f5db904dad6c633521a74f387a32e9ff999808faaca428e78f85505d

    We adopt its rule that model fitting excludes labels involving a held-out source neuron class in either endpoint role. Our implementation and numerical inputs are new.

  6. Early two-step paths gave a 0.000096 mean Brier error reduction after wiring controls in two adult C. elegans head connectomes sci:sha256:810e44724d50e2d32bb459583f04a7648aadfc862c314a420b2e4314d439a6c6

    This related test used early indirect walks to predict adult anatomical connections. Our outcome is adult calcium response detection.

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