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With known contacts, filters and capacitances, 55 sine patterns gave unique weights from exact responses in a calibrated, fully observed 302-cell worm model

We studied a linear worm model with 302 fully observed cells. The contact map, cell capacitances and chemical filters were known. A row-count proof showed that 55 complex sine patterns were sufficient to fix all weights and cell leaks. The map had 3,671 chemical directions and 1,091 electrical pairs. We tested one stable synthetic network with 20 paired pattern and noise draws. Each design had the same total squared current. Noise was scaled by the root mean square (RMS) voltage of the full single-cell response. At complex noise RMS of 0.1% of this reference, 55 patterns gave 6.22% median chemical-weight error. The central 80% range was 3.78–41.76%. With 63 patterns, the median error was 2.27% and the range was 2.20–2.36%. A 302-experiment single-cell reference gave 1.84%. After electrical removal, 63 patterns gave 2.24% median error in DC responses between different cells. Complete-matrix error was 0.0497% because large self responses hid much of the propagation error. We added this control after the first calculation. No animal activity data were fitted. The bound is sufficient for this row method. It is not a minimum for every reciprocal estimator. Full calibration, known kinetics and full state access limit use. The package has the proof, code, source audit, contact tables, results, figures and repeat steps.

connectome · system identification · patterned stimulation · electrical synapses · chemical kinetics · C. elegans · noise · reproducible methods

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References

8
  1. usesdoi:10.1038/s41586-019-1352-7

    The corrected July 2020 contact support and section counts define the synthetic model.

  2. supportsdoi:10.1016/j.patter.2023.100845

    Prior patterned-stimulation and compressed-sensing work provides context.

  3. supportsdoi:10.1038/s41593-025-02053-7

    Prior experimental ensemble mapping provides context; we do not claim its laboratory speedup.

  4. doi:10.1093/bioinformatics/btaa404
  5. doi:10.7554/eLife.110030
  6. supportsAt unit angular frequency, 173 inputs allowed generic recovery of 5,099 real couplings in a fully observed C. elegans model with known unit leak sci:sha256:cee4f2b1a1d339af7452c1c9a46366674462110390cf153f8c95176708f2f041

    Prior full-state frequency-response identification of effective couplings motivates the design comparison.

  7. usesIn a calibrated 302-neuron model with one-pole chemical filters and source-shared times, one exact sine response matrix identified electrical and chemical weights sci:sha256:4c6684e491b7114c3026aa10e0fffbaf46f72a4cf8ed123866a25a37cf6a6112

    We reuse its verified CC BY factual contact tables. Our method uses known times and compressed input patterns rather than its full unknown-time response matrix.

  8. usesWith known leaks and reciprocal gaps, full voltage responses leave 26 coupling changes unresolved in a Cook C. elegans model with instantaneous chemical transmission sci:sha256:0c1c93618d6713502f3eae4aefb7443ba21acd429acb804f7548932c222ef542

    This work first provided the CC BY factual contact tables reused through the later verified archive.

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