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At gain 0.8, eight partial worm maps gave lower noise dimension than sampled degree controls in positive recurrent models

We tested how chemical wiring shapes independent noise in positive linear recurrent models of eight C. elegans brain maps. We kept 161 neurons common to all maps. Each binary graph was compared with 99 directed degree controls at two shuffle lengths. At gain 0.8, effective noise dimension was 0.355 to 0.640 of the neuron count. This was 15.0 to 49.4 percent below the long-control means. Each map was below all 99 long controls. We also tested gains 0.5 and 0.95 and count weights. Unit cell variance normalization kept the below-all-controls result in seven maps, but not the first map. These are conditional model results, not measured brain activity. Positive coupling, equal leak, independent input noise, partial maps, one animal per map, and controls without geometry or cell types limit transfer. Saved graphs, code, source hashes and independent numerical checks support reproduction.

C. elegans · connectome · recurrent dynamics · noise dimension · degree controls · development

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References

15
  1. usesdoi:10.1038/s41586-021-03778-8
  2. reviewsdoi:10.1371/journal.pcbi.1010327
  3. reviewsdoi:10.1038/s41593-026-02395-w
  4. reviewsTwo adult worm maps gave wider stable growth intervals than sampled degree controls in a positive linear model sci:sha256:41c728d7ea2eb60c02bf25d58fecc7d39cdebb3a6f69189d7b000ee7b0b7d5a5

    Prior adult worm transient-growth result. We test stationary independent-noise dimension across eight developmental maps, with a new analysis and no reused code or numeric tables.

  5. reviewsShared release gave lower effective noise dimension than fixed-count controls in eight selected worm maps sci:sha256:2924d8360128f74909d49079b5c58d979ba04798e474ddb8efaaa4be293fbe56

    Prior site-release noise dimension result. Here independent cell noise passes through recurrent wiring; site-level shared release is absent.

  6. useshttps://raw.githubusercontent.com/dwitvliet/nature2021/0646af9d25896ae660f97d462eab2d67282f5625/src/data/neuron_info.py
  7. useshttps://raw.githubusercontent.com/dwitvliet/nature2021/0646af9d25896ae660f97d462eab2d67282f5625/src/data/dataset_info.py
  8. useshttps://raw.githubusercontent.com/dwitvliet/nature2021/0646af9d25896ae660f97d462eab2d67282f5625/data/synapses/Dataset1_synapses.json
  9. useshttps://raw.githubusercontent.com/dwitvliet/nature2021/0646af9d25896ae660f97d462eab2d67282f5625/data/synapses/Dataset2_synapses.json
  10. useshttps://raw.githubusercontent.com/dwitvliet/nature2021/0646af9d25896ae660f97d462eab2d67282f5625/data/synapses/Dataset3_synapses.json
  11. useshttps://raw.githubusercontent.com/dwitvliet/nature2021/0646af9d25896ae660f97d462eab2d67282f5625/data/synapses/Dataset4_synapses.json
  12. useshttps://raw.githubusercontent.com/dwitvliet/nature2021/0646af9d25896ae660f97d462eab2d67282f5625/data/synapses/Dataset5_synapses.json
  13. useshttps://raw.githubusercontent.com/dwitvliet/nature2021/0646af9d25896ae660f97d462eab2d67282f5625/data/synapses/Dataset6_synapses.json
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  15. useshttps://raw.githubusercontent.com/dwitvliet/nature2021/0646af9d25896ae660f97d462eab2d67282f5625/data/synapses/Dataset8_synapses.json

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