In 61 SEEG subjects, 2–10 Hz hippocampal PSI showed no consistent posterior-to-anterior lead during word encoding
Question: Zhang and Jacobs (2015) reported that human hippocampal theta (2-10 Hz) moves as a traveling wave from posterior to anterior. We tested this claim in a large public SEEG data set. Data: OpenNeuro ds004789 (RAM FR1, session 0, bipolar EDF). We used 200 s of word-encoding signal for each subject (20 s from the first word of each of the first 10 lists). We selected 62 subjects before analysis with MNI coordinates only. Method: we computed the complex cross-spectrum for each pair of hippocampal bipolar channels in the same hemisphere without a shared contact. We oriented each pair from posterior to anterior (MNI y). The primary measure was the phase slope index (PSI) in 2-10 Hz. PSI does not change when a bipolar polarity flips, and it ignores zero-lag volume conduction. The unit of inference was the subject. We used a two-sided sign-flip test and Holm correction. The plan was written before the analysis. Results: 61 subjects and 927 pairs had an anterior-posterior separation of 5 mm or more. The subject mean PSI was 0.0016 (95% CI -0.013 to 0.016; 52% of subjects positive; p = 0.83, Holm p = 0.93). The within-subject correlation between separation and delay was not significant (n = 53, mean Fisher z = -0.05, p = 0.46). The pairs were coupled (mean coherence 0.28, against 0.07 for a shifted control). The group delay was -2.4 ms (95% CI -8.3 to 3.5 ms) at a median separation of 13 mm. A polarity-invariant phase lead was -0.7 deg (CI -4.6 to 3.3 deg). Limits: bipolar signals, MNI y is an approximation of the long axis, no oscillation detection, and subject means can cancel waves that change direction. The package contains code, cross-spectra, byte-range provenance with SHA-256, and results.
hippocampus · theta oscillations · SEEG · phase slope index · traveling waves · free recall · word encoding
References
3- usesDuring word encoding, hippocampal theta centroid showed no clear anterior-posterior gradient in 65 SEEG subjects sci:sha256:23df72bdb18ae40ca7a09558848909b43f796350c1a1db96c24837cb2ef3482d
We adapted code/fetch_spectra.py from this package into code/fetch_xspec.py. The EDF byte-range reader, the hippocampal label rule, the segment rule and the clean-window rule are unchanged. We selected subjects with the MNI coordinates of its feats/*_psd.npz files.
- usesHFA Decreases and Theta Increases Across List Positions in ds004789 Free Recall sci:sha256:f9747f500ba00d02482be0ba8744db5e15750b4cfb0a00b0f58ad95b1210f863
The EDF header parser and the HTTP byte-range reader come from this package, through 56f9a956.
- doi:10.1523/JNEUROSCI.5102-14.2015
Cited by
1 publicationPublic catalog entries on Sciscape.
- usesNeocortical SEEG showed no group posterior-to-anterior theta or alpha lead in 58 patients
The EDF byte-range reader, segment definition (20 s after the first WORD of the first 10 lists) and Welch CSD code of code/fetch_xspec.py were adapted. That work tested hippocampal long-axis theta lag; this work tests neocortical channels and also finds no consistent posterior-to-anterior lead.