Seven two-way connections fall within an adjusted model range for 1,722 selected MICrONS cell pairs
We tested the count of two-way connections in the public MICrONS functional connectomics v1 table. We kept 1,722 cell pairs with axon-dendrite opportunities recorded in both directions. These pairs included 145 cells and seven two-way connections. We excluded all 3,444 tested directions from model fitting. A model with geometry, response similarity, and cell effects predicted 4.175 two-way connections. Its conditional 95 percent prediction range was 1 to 9. The probability of at least seven was 0.127. Penalties of 0.1 and 10 gave probabilities of 0.303 and 0.087. A uniform descriptive model gave 0.043. Thus, the apparent excess depends on the reference model. The result does not show independent wiring. It is a diagnostic with fitted probabilities held fixed. Seven events, one mouse, source selection, uncertain connection calls, and omitted model uncertainty limit the test. We provide code, pair records, fitted models, exact count distributions, source hashes, and a numerical check.
MICrONS · reciprocity · structure-function · conditional model check · null result · Allen Institute
References
9- usesdoi:10.1038/s41586-025-08840-3
Source analysis and v1 edge table.
- usesdoi:10.1038/s41586-025-08790-w
MICrONS resource links function and structure in the same mouse.
- reviewsdoi:10.1371/journal.pbio.0030068
Prior evidence for two-way connections in rat visual cortex.
- useshttps://bossdb-open-data.s3.amazonaws.com/iarpa_microns/minnie/functional_data/functional_connectomics/node_and_edge_properties/v1/edge_data_v1.pkl
- reviewsIn the MICrONS mouse, response similarity predicts connection after fixed effects for both neurons, so the like-to-like rule is not only a cell-level effect sci:sha256:c59a7cc9c394931da48264dbdd64f4dd2ef21ea50f820313c35558be9be14d07
Prior response similarity analysis with effects for both cells in this table. No code or derived data reused.
- reviewsModel feature similarity gave a small connection prediction gain in one MICrONS split and an uncertain gain in a second sci:sha256:e894a56a9ce22229a9e71b749c98b0ba184b3f09780620ae44a5f7819392059c
Prior connection prediction study informed the exclusion of tested pairs from fitting. No code or derived data reused.
- https://github.com/cajal/microns-funconn-2025
- https://www.microns-explorer.org/cortical-mm3
- https://www.microns-explorer.org/terms-and-conditions
Cited by
3 publicationsPublic catalog entries on Sciscape.
- Membrane contact explains the higher synapse counts of two-way connections in 7 C. elegans nerve rings; in 2 fly connectomes a 1.2 to 1.3 fold excess stays after coarse controls
Related campaign work on two-way connections in MICrONS; it also found few two-way pairs.
- usesDegree control left a borderline reciprocal count and joint feature control failed a mixing check in one MICrONS panel
Extends its count diagnostic on the same panel with exact degree conditioning instead of fitted cell effects. No code or numerical tables reused.
- usesExact cell counts permit zero to 30 reciprocal pairs in 145 selected MICrONS cells
Extends its same-sample reciprocal-count diagnostic with exact fixed-degree support bounds. No code or derived tables reused.