sciscape Publications
← All publications

With relay and partner controls, input orientation profiles gave no clear output prediction gain in a ridge test of 1,314 neurons from one MICrONS mouse

We tested whether the orientation preferences of a neuron's input partners help to predict those of its output partners. We used MICrONS minnie65 v1507 and visual tuning estimates from one mouse. We repeated the complete scan of 303,164,967 connection records and recovered 143,765 links among 8,284 matched neurons. The main test used 1,314 pyramidal relay neurons with global orientation selectivity of at least 0.25 and at least five input and five output partners. We removed reciprocal links to keep the two partner sets separate. Nested ridge models controlled relay tuning, cell labels, soma position, model field centers, partner geometry and partner class fractions. Adding the input mean orientation vector cut output profile test error by 0.004%. The conditional 95% spatial block resample range was -0.205% to 0.206%. Four other spatial splits gave gains from -0.272% to 0.002%. The raw path alignment was 0.09598; its cross-fitted residual score was 0.00262, with a range that included zero. A planned lower-selectivity test used 3,111 relays and gave a 0.328% error decrease. Four added split checks at that cutoff gave gains of 0.042% to 0.316%. A wider penalty grid left the main result near zero. These results concern known partner sets, estimated tuning and one sampled graph. They do not test causal signal transfer. The package preserves the selected graph, source provenance, code, figures, all 26 analyses and instructions. A full repeat matched every numerical summary and table.

connectomics · MICrONS · visual cortex · orientation tuning · two-step paths · ridge regression · spatial validation · structure and function

Admitted 1 citing publication

References

6
  1. usesA fixed test of 546 MICrONS connections gave no clear mean synapse size relation to motion direction after orientation and neuron controls sci:sha256:0880b422c86f2f45dad497f8822c9cd8cefb417131f395827eafcc59792cb194

    We use its full matched neuron and connection extract and its MIT extraction and download code. We independently repeat its complete source scan.

  2. Shared input identities reduced estimated orientation prediction error by 2.23% after position controls in a fixed test of 3,461 neurons from one MICrONS mouse sci:sha256:73d06e1c0a8fe6bdba8191b8397acb3c264052279ac8cb916e92afb37ae8b7a3

    It tests shared input identity against a target neuron's own estimated orientation. Our test concerns input and output partner profiles at a relay.

  3. usesdoi:10.1038/s41586-025-08790-w

    The MICrONS structural and functional dataset is the biological source.

  4. doi:10.1038/s41586-025-08840-3

    Pairwise functional wiring and local orientation biases motivate the conditional path test.

  5. usesdoi:10.1038/s41586-025-08829-y

    The released digital twin estimates provide the orientation and model field-center values.

  6. doi:10.1093/cercor/bhae433

    It studies higher-order cortical motifs and functional relations. The present neighborhood-profile test has a different scope.

Cited by

1 publication

Public catalog entries on Sciscape.