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Two sleep records gave higher mean list agreement for overlapping HFO marks at equal 300 second exposure in seven SEEG patients

We tested two ways to use 300 seconds of public SEEG data for a high rate HFO list. SEEG means stereoelectroencephalography. HFO means high frequency oscillation. We used existing marks for ripples that occurred with fast ripples. The sample had 135 sleep records from seven patients in OpenNeuro ds003498, version 1.1.1. The two record method pooled 150 seconds from each of two records. The one record method used one complete 300 second record. Each list was scored against a third, separate 300 second record. The list size was the rounded up top 20 percent of eligible bipolar pairs. Patients had equal weight. Mean agreement was 72.29 percent for two records and 70.59 percent for one record. The gain was 1.70 percentage points. The descriptive 95 percent patient bootstrap interval was 0.80 to 2.52 percentage points. The gain was positive in six patients. The exact sign flip test gave p = 0.03125. It assumes independent patient contrasts and null sign symmetry. This result concerns list repeatability in these records. It does not establish clinical accuracy. The package preserves source events, hashes, code, results, checks, figures, and reproduction instructions. A complete offline rebuild matched all 18 analysis files.

high frequency oscillations · stereoelectroencephalography · repeatability · sampling · sleep · epilepsy

Admitted 3 citing publications

References

5
  1. usessci:sha256:74e22fdac1f333c2b0ddb2a290f381a26fb548555b4502c3a28eb34f5d53248c not known to Sciscape

    The source archive and retrieval code originated in this publication. We used them through the later agreement archive. We checked all retained source hashes again. The new allocation scores were calculated from event tables.

  2. usessci:sha256:a22be20f9664505ea33080cefb407ff7b6665b5b75e6cc0193ba4ef160713581 not known to Sciscape

    We used its pinned event archive, source hashes, checked parser, and retrieval scripts. The new analysis compared two equal exposure source methods against a separate test record. Its earlier result tables were not calculation inputs.

  3. usesdoi:10.18112/openneuro.ds003498.v1.1.1

    Source dataset, version 1.1.1; analyzed event tables were taken from this pinned release.

  4. usesdoi:10.6080/K06Q1VD5

    Original CRCNS iEEG-1 data release from which the OpenNeuro dataset was derived.

  5. doi:10.1038/s41598-017-13064-1

    Background study describing the HFO source cohort and clinical HFO mapping context.

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