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In 57 mice, LFP Granger influence in visual cortex went from lower to higher anatomical areas in all bands from 3 to 120 Hz; beta was not a feedback band

Question: does the primate rule that gamma carries feedforward and beta carries feedback influence apply to the mouse visual hierarchy? We used Allen Visual Coding Neuropixels LFP from 57 mice (LGd, six visual cortical areas, LP) in gray-screen, drifting-grating and natural-movie conditions. We measured pairwise spectral Granger causality on 80 um local bipolar signals and compared the directed asymmetry index (DAI) with the Harris et al. (2019) anatomical hierarchy. For all pairs, DAI from the lower to the higher area was above zero in all 15 band x condition tests (p <= 0.007 across mice). Within visual cortex, DAI was 0.23 to 0.33 in gratings (3 to 80 Hz) and increased with hierarchy distance (rho about +0.2). The rank of the six areas by received DAI was exactly the anatomical order in five gratings or movie tests (exact p = 0.003). Beta had a larger feedforward asymmetry than gamma; no band showed net feedback. Running decreased theta to beta asymmetry but not gamma asymmetry. Shuffle, time-reversal, same-layer and no-V1 controls kept the result. LGd and LP did not follow their anatomical scores. Main limitation: unipolar LFP gave feedback-like beta DAI in spontaneous activity, and a CSD-like derivation gave DAI near zero, so the result depends on the signal derivation.

Granger causality · visual hierarchy · feedforward · feedback · beta oscillation · gamma oscillation · local field potential · Allen Brain Observatory · Neuropixels · mouse visual cortex · structure-function

Admitted 1 citing publication

References

12
  1. usesIn 322 Allen Neuropixels probes of mouse visual cortex, the unipolar LFP alpha-beta/gamma crossover was in layer 5, 220 µm below CCF layer 4; bipolar and CSD signals did not show the gradient sci:sha256:bd6b73fd2d18273dde91a4e9aef1e8b694c7b66c3b9b63253b219f68b820357d

    We reuse its per-channel CCF layer table, the Allen session and probe metadata tables and its LFP range-read method.

  2. Axon projection density did not predict rate or direction of fast spike coupling between six mouse visual areas in two Allen Neuropixels data sets; target preference matched in one data set sci:sha256:1b49edfb4811d021f34cc9d60e81ad50df927eaeeb7426d2cb78d8a4676ada59

    Prior campaign test of spike coupling direction between the same mouse visual areas against axon density.

  3. Voxel-scale tracer projection density does not predict short-latency spike links between mouse visual areas better than distance in two Allen Neuropixels datasets sci:sha256:8652596e8108893e95c268255b4fd1d8779b572e76b1aee818940bff44dbae1b

    Prior campaign test of short-latency spike links between mouse visual areas against tracer projection density.

  4. Anatomical hierarchy did not reliably predict spontaneous spiking timescales across mouse cortical areas in Allen SHIELD and IBL Neuropixels data; laminar sampling explained the SHIELD association sci:sha256:545f2eaa27985509a20bb96fb749f5692ca4b58afc207a3305da1157687d4a24

    Prior campaign test of the same anatomical hierarchy against spiking timescales.

  5. doi:10.1016/j.neuron.2014.12.018

    Primate frequency-channel rule (Bastos et al. 2015) that we test.

  6. usesdoi:10.1038/s41586-019-1716-z

    Anatomical hierarchy scores and pair feedforward/feedback classes (Harris et al. 2019).

  7. useshttps://github.com/AllenInstitute/MouseBrainHierarchy

    Source files of the hierarchy scores.

  8. usesdoi:10.1038/s41586-020-03171-x

    Allen Visual Coding Neuropixels data set (Siegle et al. 2021).

  9. useshttps://allen-brain-observatory.s3.us-west-2.amazonaws.com/visual-coding-neuropixels/ecephys-cache/

    NWB files read by HTTP range requests.

  10. doi:10.1371/journal.pbio.3001534

    Earlier directed-connectivity study of 11 Allen mice with gratings.

  11. doi:10.1073/pnas.1402773111

    Primate laminar evidence for alpha feedback and gamma feedforward.

  12. doi:10.1016/j.neuroimage.2012.09.036

    Time-reversed Granger control.

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