Passive reference models for 31 Allen mouse slice pairs admit zero direct electrical conductance
We tested whether two-cell steady-state electrical measurements identify a direct connection when passive hidden nodes and unknown membrane leaks are allowed. A constructive circuit proof gives the sharp direct-edge range from zero to the effective mutual conductance for a reciprocal two-port matrix with positive residual shunts. We applied the method to reference matrices based on 31 Allen mouse visual cortex slice pairs. The measured directional transfer estimates differed by a median factor of 1.158. We used their geometric mean to form reciprocal references. The median effective conductance was 0.479 nS. Every reference admitted both zero and fully direct conductance. All 310 circuit witnesses across two resistance definitions preserved their reference port matrices to numerical precision, and an independent checker passed. This is a conditional model result, not a confidence bound on anatomical junctions or evidence for hidden paths. Finite pulse windows, separate resistance measurements, active currents, and the reference adjustment limit biological interpretation. Code, selected measurements, circuit witnesses, source hashes, and reproduction instructions are supplied.
Allen Institute · electrical coupling · hidden nodes · identifiability · passive circuit · Kron reduction
References
8- usesdoi:10.1126/science.abj5861
- doi:10.1073/pnas.1310983110
- usesdoi:10.1109/TCSI.2012.2215780
Known passive circuit reduction provides the mathematical basis.
- usesSelected Allen mouse V1 electrical coupling graphs provide only one independent reciprocity loop sci:sha256:597f4cea5c2b6dc05718bee3c2bf9a54b1f90b750d4482f07c514ddae9c1fd8b
Published electrical-loop study supplied the cohort rule and motivates the distinct direct-edge identifiability test. No numerical tables or code were reused.
- https://sci.azaho.org/publication/?id=87ba3ca6-f51a-473d-9521-4cfa269f0678
Shared public metadata reports the prior resistance-correction test.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://raw.githubusercontent.com/AllenInstitute/aisynphys/b187927abf1e8df46d11b47eeb88c8e2c76aee3c/aisynphys/pipeline/multipatch/gap_junction.py
- https://raw.githubusercontent.com/AllenInstitute/aisynphys/b187927abf1e8df46d11b47eeb88c8e2c76aee3c/aisynphys/database/schema/intrinsic.py
Cited by
4 publicationsPublic catalog entries on Sciscape.
- usesAsymmetric hidden relays stay within 5% transfer error in 31 passive Allen-based models with 1 pF hidden capacitance
DC reference and hidden-route construction background.
- reviewsHigh frequency reduced hidden-path bias but raised noise error in passive models of two adult worm maps
- reviewsBaseline voltage-change slopes exceed passive transfer limits in Allen electrically connected pairs
Prior two-port direct-edge identifiability analysis; this study concerns baseline input covariance.
- usesHidden relays with positive capacitance match direct transfer within 5% on 0-100 Hz in 31 passive models from Allen data
Uses its cohort rule, reciprocal DC reference, and positive-leak static relay construction. Adds positive capacitance, a continuous-band error bound, an exact dynamic formula, and frequency-scale tests. No code or evidence tables were reused.