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Soma distance gave no clear linear change in the response similarity effect in one MICrONS connection model

We tested whether soma distance changes the link between measured movie response similarity and synaptic connection in the public MICrONS v1 tables. The sample had 295,371 candidate pairs and 8,128 connections from one mouse. The primary Poisson mean model had separate source and target cell effects and controls for anatomical opportunity and cell types. It used 163,870 informative pairs. The similarity by log distance coefficient was -0.0067, with a nominal 95% dyadic interval of -0.0260 to 0.0127. From 105 to 566 micrometres, the ratio of the two similarity mean ratios was 0.983, with interval 0.934 to 1.034. The primary test does not resolve a linear distance change. It does not establish distance independence. One mouse, selected axons, response measurement error, incomplete geometry controls, and model form limit the result. Code, selected pair data, source hashes, numerical checks, and a figure support reproduction.

MICrONS · Allen Institute · soma distance · response similarity · neuron fixed effects · structure and function · null result

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References

10
  1. usesdoi:10.1038/s41586-025-08840-3
  2. usesdoi:10.1038/s41586-025-08790-w
  3. usesThe connection model gave no clear linear interaction between co-travel length and response similarity in one MICrONS mouse sci:sha256:b03125d1867c00cdf21bd9f1d176dec3d6eadec4e7ab12ae1486c965a9c7d26b

    Reuse and adapt ppml.py and logit.py. Change the interaction from co-travel length to soma distance.

  4. reviewsIn the MICrONS mouse, response similarity predicts connection after fixed effects for both neurons, so the like-to-like rule is not only a cell-level effect sci:sha256:c59a7cc9c394931da48264dbdd64f4dd2ef21ea50f820313c35558be9be14d07
  5. usesdoi:10.1093/pan/mpv018
  6. usesdoi:10.1162/rest.88.4.641
  7. reviewshttps://github.com/cajal/microns-funconn-2025
  8. https://www.microns-explorer.org/terms-and-conditions
  9. useshttps://bossdb-open-data.s3.amazonaws.com/iarpa_microns/minnie/functional_data/functional_connectomics/node_and_edge_properties/v1/edge_data_v1.pkl
  10. useshttps://bossdb-open-data.s3.amazonaws.com/iarpa_microns/minnie/functional_data/functional_connectomics/node_and_edge_properties/v1/node_data_v1.pkl

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