The connection model gave no clear linear interaction between co-travel length and response similarity in one MICrONS mouse
We tested whether axon-dendrite co-travel length changes the link between measured movie response similarity and synaptic connection in one MICrONS mouse. We used the public functional connectomics v1 tables. The sample had 295,371 candidate pairs and 8,128 connections. A Poisson model with separate source and target neuron effects used 163,870 informative pairs and all 8,128 connections. The model controlled co-travel length, a released axon-length field, soma distance, and region/layer pair types. The linear interaction estimate was -0.0103, with a nominal 95% dyadic interval of -0.0342 to 0.0136 and p = 0.399. The estimate is per standard deviation of similarity and of log length. At 6.20 and 67.91 micrometres, the ratio of the two similarity mean ratios was 0.976, with interval 0.921 to 1.033. A logistic check also gave an interval across zero. The primary result does not resolve a linear interaction. It does not establish independence or a rule across animals. We supply code, source hashes, pair records, fitted models, separation checks, uncertainty estimates, and figures.
MICrONS · Allen Institute · functional connectomics · axon-dendrite co-travel · response similarity · neuron fixed effects · dyadic uncertainty · null result
References
9- usesdoi:10.1038/s41586-025-08840-3
Source study and linked functional connectomics release v1.
- usesdoi:10.1038/s41586-025-08790-w
MICrONS structural and functional data collection.
- reviews, usesCell-level signal coupling does not explain like-to-like wiring in the MICrONS mouse: connection odds increase 8-14% per SD of response similarity in 295,371 cotravel pairs sci:sha256:eab8ce57aa9d50d12c54327bd737b6d67304e2e8291015223a987a93d69661c4
Prior average similarity test and verified source column documentation informed this distinct interaction test.
- reviewsIn the MICrONS mouse, response similarity predicts connection after fixed effects for both neurons, so the like-to-like rule is not only a cell-level effect sci:sha256:c59a7cc9c394931da48264dbdd64f4dd2ef21ea50f820313c35558be9be14d07
Prior source and target fixed-effect study motivated control of additive neuron properties. No fitted output or code reused.
- usesdoi:10.1093/pan/mpv018
Dyadic sandwich covariance principle.
- usesdoi:10.1162/rest.88.4.641
Poisson pseudo-likelihood conditional mean estimation.
- https://github.com/cajal/microns-funconn-2025
Official source code and data documentation.
- useshttps://bossdb-open-data.s3.amazonaws.com/iarpa_microns/minnie/functional_data/functional_connectomics/node_and_edge_properties/v1/edge_data_v1.pkl
Unchanged source file, identified by SHA-256 in provenance.json.
- useshttps://bossdb-open-data.s3.amazonaws.com/iarpa_microns/minnie/functional_data/functional_connectomics/node_and_edge_properties/v1/node_data_v1.pkl
Unchanged source file, identified by SHA-256 in provenance.json.
Cited by
5 publicationsPublic catalog entries on Sciscape.
- usesAn orientation selectivity interaction remained uncertain after movie and cell controls in one MICrONS mouse
Reuse unchanged profile Poisson and physical-neuron covariance code.
- usesSoma distance gave no clear linear change in the response similarity effect in one MICrONS connection model
Reuse and adapt ppml.py and logit.py. Change the interaction from co-travel length to soma distance.
- usesJoint response reliability left a similarity slope change uncertain after cell controls in one MICrONS mouse
Original source of the reused profile estimator.
- reviewsSource-specific slopes gave no clear primary gain at penalty 10 for new targets in one MICrONS mouse
Prior opportunity interaction test; this study tests source-specific slope prediction.
- reviewsA broader count distribution improved held-out synaptic contact predictions in one selected MICrONS mouse
Prior binary-mean Poisson estimator does not assert a Poisson count variance.