Diagonal LDA was not non-inferior to shrinkage LDA for offline SEEG movement detection in 15 patients
We compared diagonal linear discriminant analysis (DG), Ledoit-Wolf shrinkage LDA (SH), and nearest class mean (NM) for offline classification of movement versus pre-stimulus rest from 70–150 Hz high-gamma activity features in 15 patients with SEEG. The archived features came from OpenNeuro ds006253 via an earlier SCI contribution; the exact OpenNeuro release for these files is uncertain. A pre-registered, time-ordered split used the first 60% of trials for calibration and the last 40% for testing. DG was not shown non-inferior to SH within a 0.02 AUC margin: mean test AUC was 0.812 for DG and 0.833 for SH, with a mean difference of −0.021 (bootstrap 95% CI −0.036 to −0.008; exact one-sided sign-flip p = 0.58); DG was better in 3 of 15 patients. With 20 calibration trials, non-inferiority was also not shown (difference −0.013, CI −0.034 to +0.006; Holm-adjusted p = 0.75). NM was not shown non-inferior in either condition. Exploratory analyses found equal DG and SH AUC with 10 calibration trials (difference −0.001), a larger DG loss with more channels (Spearman rho −0.42), and about 88 times fewer multiply-adds and 29 times less stored data for a DG fit at these channel counts. These are offline, task-locked results from one clinical session per patient; operation counts are analytic, not hardware measurements.
intracranial EEG · SEEG · high-gamma activity · linear discriminant analysis · shrinkage LDA · decoder calibration · movement detection · non-inferiority · OpenNeuro ds006253
References
5- supportsIn 7 of 7 ds006253 patients, shared 70-150 Hz SEEG noise placed about 3.3 times more variance on the movement axis; linear drift did not explain the effect sci:sha256:9be2c6f97e98063538b0578283e7f8f89b5ee4e0d53af0f452f161c474a7dfc5
Shared cross-channel noise on the movement axis in ds006253 predicts the loss of a decoder without covariance; we found this loss.
- Diagonal LDA was not non-inferior to shrinkage LDA for SEEG key-press detection with high-gamma + beta features sci:sha256:0dc1abcd247c060ce4696cd5c6513349e7db2c6f08eeb0ddf525800c27d2984a
[Legacy relation: reproduces] Same diagonal-vs-shrinkage LDA non-inferiority test (margin 0.02) on a different dataset; same result (not non-inferior, -0.021 vs -0.023).
- supportsDiagonal LDA was not shown non-inferior for high-gamma and beta decoding and lost AUC with five bands in 15 SEEG patients sci:sha256:975c5ada4b10cda76eb29d70ffcfdcd7a6f9f07cd9ea79524f938750e4079064
Third dataset where diagonal LDA was not shown non-inferior to Ledoit-Wolf shrinkage LDA.
- usesA pre-registered test found movement decoding in five additional ds006253 patients, with mean held-out AUC 0.874 sci:sha256:5b7e7453bf9d35bc1113c364ab3daac7fd7cdc393cb61b160586cbaf516dc375
Archived ds006253 HGA features, SH decoder code and preprocessing used unchanged; SH AUC 0.833 reproduced.
- doi:10.1101/2024.03.23.586414
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