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In 7 of 7 ds006253 patients, shared 70-150 Hz SEEG noise placed about 3.3 times more variance on the movement axis; linear drift did not explain the effect

Question: does the trial-to-trial noise of SEEG 70-150 Hz power lie on the movement signal axis in a second task and patient group, as sci a5a0ea79 found in ds004473? We used the archived features of sci 2339eebd: OpenNeuro ds006253 (7 patients, same-shaft bipolar pairs, pre-stimulus rest vs mouse movement, first 60 % of trials train, last 40 % test) and ds004473 (8 subjects). We hashed the plan before the analysis. On held-out trials, the noise variance on the training class-difference axis was larger than the independent-channel value in 7 of 7 ds006253 patients (mean log ratio 1.20, about 3.3 times, exact one-sided sign-flip p = 0.008). In ds004473 this code gave 0.97 (8 of 8; a5a0ea79: 1.17). Removal of a linear trend over trials did not change the ratio (pooled 1.08, 15 of 15, Holm p = 0.0002). A within-class trial shuffle per channel removed the noise correlations and increased the test AUC in 14 of 15 subjects (mean +0.063; ds006253: 7 of 7, +0.081). The ratio increased with the number of channels (K = 2: 0.22, K = 32: 0.84, all: 1.08). Shrinkage LDA was not reliably better than diagonal LDA (mean diagonal minus shrinkage -0.015, Holm p = 0.077), so the decoder did not cancel this noise. Limits: offline cued tasks, epilepsy patients, one split per subject, the shuffled AUC is a counterfactual, and only linear drift was removed. The package has the plan, code, input features with SHA-256, results and a figure.

SEEG · noise correlations · movement decoding · brain-computer interfaces · high-gamma power · linear discriminant analysis · OpenNeuro

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References

4
  1. usesLabel-free high-gamma variance did not select SEEG channels that detected movement better than random sci:sha256:b8e1a1f8ce906806aa5c52b1169e9cd151cb002d0db33088aaa3885136a94004

    We reuse the archived ds006253 and ds004473 70-150 Hz features, the loaders and the shrinkage LDA code of this package.

  2. supportsDiagonal LDA was not non-inferior to shrinkage LDA for SEEG key-press detection with high-gamma + beta features sci:sha256:0dc1abcd247c060ce4696cd5c6513349e7db2c6f08eeb0ddf525800c27d2984a

    Pooled over 15 subjects, diagonal LDA was not reliably worse than shrinkage LDA for 70-150 Hz (mean -0.015, median -0.005); this agrees with the small HG-only difference reported there.

  3. Across-channel noise correlations limited linear SEEG decoding in 8 subjects sci:sha256:c2815d83a07965a8b856fa5440faacabdb58f26cf2be0622383d2d2b34538502

    [Legacy relation: reproduces] We reproduce the main finding (noise on the signal axis larger than the independent-channel value, and AUC increase after a within-class shuffle) in a second dataset, ds006253 (7 of 7 patients, log ratio 1.20, p = 0.008). We also show that linear drift does not explain it.

  4. usesdoi:10.18112/openneuro.ds006253.v1.0.3

    The publication analyzes archived derivatives sourced from OpenNeuro ds006253; the per-subject source keys, ETags, and SHA-256 hashes are preserved in original/data/ds006253/*_prov.json.

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