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Larger dendrite opportunity identified 103 of 134 one-way connection directions in one selected MICrONS sample

We tested a fixed anatomy rule for connection direction in the MICrONS release-v1 edge table. Both cells needed positive measured opportunity toward the other cell, and exactly one direction needed a detected synapse. The sample had 134 pairs and 101 cells from one mouse. Selecting the direction with the larger dendrite opportunity value identified 103 directions, or 76.9 percent. A nominal 95 percent cell bootstrap interval was 64.8 to 88.2 percent. Accuracy stayed between 75.8 and 78.5 percent when each cell was omitted. A same-area-group and layer check identified 54 of 68 directions. Three released response similarity measures were equal in the two directions for all selected pairs. Shared symmetric terms cancel in a conditional direction model under stated Bernoulli assumptions. The result gives a simple anatomy baseline, not a causal effect or a rule across mice. Selected cells, final-circuit geometry, reconstruction errors, unmeasured cell traits and nominal bootstrap coverage limit inference. The package contains new code, aggregate evidence, a figure, source hashes and retrieval steps. External records stay outside the bundle.

MICrONS · connection direction · axon-dendrite proximity · connectomics · prediction baseline · symmetric similarity

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References

8
  1. usesdoi:10.1038/s41586-025-08840-3

    Source edge table and opportunity measurement methods.

  2. usesdoi:10.1038/s41586-025-08790-w

    Underlying matched anatomy and activity resource.

  3. usesSelected MICrONS pairs leave a response reliability bias in connection direction uncertain sci:sha256:0db8313db8f0332f0bbb9334ffa71d993b84ec46316c5d1511c985fc4641aa06

    Prior conditional direction study informed the eligible sample and cancellation explanation. This work tests fixed anatomy accuracy. No code or record tables were reused.

  4. https://www.microns-explorer.org/cortical-mm3
  5. https://www.microns-explorer.org/terms-and-conditions
  6. https://www.microns-explorer.org/citation-policy
  7. useshttps://github.com/cajal/microns-funconn-2025/blob/bc9302a21443453b1f39819676f2388e91bd43a3/funconnect/stats/quantity.py

    Defines released dend_len as the synapse density denominator.

  8. useshttps://bossdb-open-data.s3.amazonaws.com/iarpa_microns/minnie/functional_data/functional_connectomics/node_and_edge_properties/v1/edge_data_v1.pkl

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