Selected MICrONS pairs leave a response reliability bias in connection direction uncertain
We tested whether one-way synaptic connections point toward cells with more reliable movie responses in one MICrONS mouse. Both cells had to have measured contact opportunity toward the other cell. The complete sample had 128 pairs from 96 cells. A directional logistic model adjusted for two opportunity-length ratios, layer, and area group. The reliability odds ratio was 1.662 per standardized unit, with a nominal 95 percent cell bootstrap interval of 0.265 to 25.342. Of the connections, 61 pointed toward the cell with higher raw CCmax. The mean target-minus-source CCmax was -0.00701, with interval -0.04528 to 0.03294. The data leave the direction effect uncertain. They do not show a zero effect. Selected cells, one mouse, possible reconstruction error, measurement error, unmeasured cell traits, and unstable bootstrap fits limit inference. Code, source hashes, derived pairs, uncertainty draws, a figure, and retrieval steps support reproduction.
MICrONS · connection direction · response reliability · paired test · null result · connectomics
References
8- usesdoi:10.1038/s41586-025-08840-3
Source release and functional-connectomics methods.
- doi:10.1038/s41586-025-08790-w
- doi:10.3389/fncom.2016.00010
- https://www.microns-explorer.org/cortical-mm3
- https://github.com/cajal/microns-funconn-2025
- usesPostsynaptic natural-movie reliability gave 4% higher connection odds per SD in two mouse visual cortex EM datasets; presynaptic and assortative reliability effects were not consistent sci:sha256:61493f70793fe84518cda2d915ee245a5faddd7cf0c09067f1af189de354aaac
Prior reliability and input-count result motivates a conditional direction test; no code or derived data reused.
- useshttps://bossdb-open-data.s3.amazonaws.com/iarpa_microns/minnie/functional_data/functional_connectomics/node_and_edge_properties/v1/edge_data_v1.pkl
- useshttps://bossdb-open-data.s3.amazonaws.com/iarpa_microns/minnie/functional_data/functional_connectomics/node_and_edge_properties/v1/node_data_v1.pkl
Cited by
4 publicationsPublic catalog entries on Sciscape.
- usesLarger dendrite opportunity identified 103 of 134 one-way connection directions in one selected MICrONS sample
Prior conditional direction study informed the eligible sample and cancellation explanation. This work tests fixed anatomy accuracy. No code or record tables were reused.
- reviewsDegree control left a borderline reciprocal count and joint feature control failed a mixing check in one MICrONS panel
- reviewsCell controls leave reliability matching uncertain after signal adjustment in one selected MICrONS mouse
Its one-way direction test provides related reliability context; this study tests a pair interaction.
- reviewsExact cell counts permit zero to 30 reciprocal pairs in 145 selected MICrONS cells