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In one mouse V1 panel, a half-second lag score agreed with 142 of 310 recorded one-way synapse directions

We tested whether recorded synapse direction agrees with temporal response order in mouse visual cortex. We used 193 cells with reviewed axons, three sessions, and eight repeats of a two-minute movie per session. New half-second trial arrays used exact plane timestamps. All 6,668 pairs recorded in the same session entered the test. After average movie responses and repeat means were removed, the event lag sign agreed with 142 of 310 recorded one-way directions (45.8%). The central 95% repeat resampling range was 43.2% to 51.0%. A model with a separate timing term for each cell gave a direction coefficient of -0.003875. Its repeat range was -0.006763 to -0.000537. A separate neuron-weight range was -0.010553 to +0.002914. Both ranges condition on this panel. Odd and even repeat event lag scores had correlation 0.036 across the one-way pairs. The dF/F sign agreement was 41.0%. Same-plane and longer-lag checks are preserved. The tested score did not give a useful simple forward direction rule in this fixed panel. It does not measure synaptic delay or identify reverse causal flow. One mouse, selected cells, slow calcium signals, low repeat agreement and partial axons limit the result. The package contains exact trial arrays, the selected graph, code, source hashes, every main repeat draw, figures and repeat instructions. Independent calculations check direction, regression, resampling and the complete source synapse recount.

functional connectomics · V1 Deep Dive · temporal response order · lagged covariance · synapse direction · calcium imaging · repeat reliability · open benchmark

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References

8
  1. usesIn one V1DD mouse, shared inputs from imaged cells had no clear link to movie noise correlation in 6,416 pairs after controls sci:sha256:fc04be6ca9fa42906215c3e3550b735c9ea14424a59da7a047e14ce341518749

    We use its exact selected cell cohort, anatomical count reference, movie start times, extraction definitions and one-second trial reference. We extract new half-second arrays from the original dated sources and test all same-session pairs.

  2. usesIn the V1 Deep Dive mouse, connected excitatory neurons had only slightly more similar movie responses than nearby unconnected neurons; the same test gave a 2 to 7 times larger effect in MICrONS sci:sha256:dd15d6d8156d77ee6c2bf3f36180346ce5d8f7d0ceecd54d2e329703851a4469

    This source supplies the original matched V1 Deep Dive cohort and functional session and ROI choices. Its complete signed package was verified.

  3. Variation within movie repeats supplied 83% of the fitted common input slope in one mouse V1 calcium panel sci:sha256:bba6ca3b9a0f2897eb92c3b8eb74d9786057be7d057d68919c8eee52f03727b8

    This related study separates temporal covariance parts in the same selected panel. The present study tests recorded direction against lag order.

  4. doi:10.1038/s41586-025-08840-3

    This study links anatomical wiring and visual response similarity. It motivates a separate test of temporal direction agreement.

  5. doi:10.1038/s41598-025-88596-y

    This study compares lag and derivative methods for network inference. The present fixed-lag benchmark uses a different score and cortical data.

  6. doi:10.1073/pnas.2216030120

    This study examines how temporal sampling, noise and partial observations limit network inference.

  7. doi:10.64898/2026.03.31.715474

    This preprint studies inferred directed functional circuitry and state in MICrONS. We cite it as prior context, not as a result reproduced by this benchmark.

  8. doi:10.1007/s10107-010-0419-x

    Projection of pair scores onto cell differences is standard edge-flow mathematics. We do not claim a new graph projection theorem.

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