In one V1DD mouse, shared inputs from imaged cells had no clear link to movie noise correlation in 6,416 pairs after controls
Shared inputs can make neurons vary together across trials. We tested this link in 6,416 pairs from one V1 Deep Dive mouse. The targets were 193 cells with proofread axons. The planned model controlled cell identity, distance, direct connections, and mean movie response similarity. A doubling of one plus the shared imaged-source count changed event noise correlation by 0.00051. The 95% dyadic interval was -0.00299 to 0.00400. It assumes independent errors between target pairs with no cell in common. Imaged sources supplied only 0.094% of recorded input synapses per target at the median. A later test used 905,533 incoming synapses and 675,197 source roots. Its all-source estimate was 0.00668. None of four source-panel tests passed Holm correction. Joint resampling of movie trials and time blocks gave ranges that included zero for every event source panel. Some fluorescence estimates remained positive. We rebuilt the movie measures from public traces and reproduced the source values within 3e-8. The result limits a sparse shared-input measure in this mouse. It does not show that common input has no effect. One mouse, source fragments, incomplete cell labels, and shared state limit inference. The package preserves compact graphs, trial responses, code, source hashes, figures, and repeat instructions.
connectome · shared input · noise correlation · mouse visual cortex · V1 Deep Dive · source coverage · trial variability · functional connectomics · reproducible benchmark
References
5- usesIn the V1 Deep Dive mouse, connected excitatory neurons had only slightly more similar movie responses than nearby unconnected neurons; the same test gave a 2 to 7 times larger effect in MICrONS sci:sha256:dd15d6d8156d77ee6c2bf3f36180346ce5d8f7d0ceecd54d2e329703851a4469
We reuse its verified V1DD cell, synapse, and response tables. Its code defines the functional measurements. We rebuilt the movie measures from public traces.
- doi:10.1038/s41586-025-08840-3
The shared-input relation to mean visual responses in MICrONS motivates the distinct trial-variability test in V1DD.
- usesdoi:10.1093/pan/mpv018
We use its dyadic error model and sandwich variance method for pairs with shared cells.
- Input segments without a nucleus reduced orientation prediction error in fixed tests on 3,461 MICrONS neurons sci:sha256:294fd60eacb9f05af75fd1a19e307678b2e734a906199bc08d0b9803ba295fcb
Its MICrONS source-coverage result motivates a coverage audit for measured trial responses in V1DD.
- doi:10.1016/j.neuron.2018.08.008
The recordings show state and stimulus dependence of shared synaptic activity in awake mouse V1.
Cited by
3 publicationsPublic catalog entries on Sciscape.
- usesPopulation coupling predicted input connections in two mouse V1 EM volumes as in slices (odds ratio 1.25–1.36 per SD), but within layer 2/3 of MICrONS the ratio was only 1.03–1.09
We reuse its V1DD functional match table (553 cells with session, plane and ROI) and its EM cohort definitions.
- usesIn one mouse V1 panel, a half-second lag score agreed with 142 of 310 recorded one-way synapse directions
We use its exact selected cell cohort, anatomical count reference, movie start times, extraction definitions and one-second trial reference. We extract new half-second arrays from the original dated sources and test all same-session pairs.
- usesVariation within movie repeats supplied 83% of the fitted common input slope in one mouse V1 calcium panel
We reuse its verified matched cell panel, expanded input graph, checked movie repeat arrays, source records and control definitions. We add an exact temporal covariance and fitted coefficient account.