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With gap counts by partner type, side and chemical state fixed, 311 of 327 pairs were forced among 163 Ciona neurons

We asked if putative gap junctions join Ciona neurons with similar chemical partners. We used 163 neurons from one larva's released 2016 map. We fixed each neuron's gap counts by partner cell type, side and direct chemical state. The chemical state was no edge, one direction, or both directions. We enumerated all 648 feasible labelled gap graphs. All contained the same 311 of 327 recorded pairs. Independent binary integer optimization confirmed this count. Recorded mean input and output cosines were 0.354952 and 0.366782. The exact reference means were 0.354627 and 0.366653. The output-minus-input contrast had an exact upper tail fraction of 0.5324. Sampled degree and region-side controls left larger similarity excesses. Removing motor and midtail neurons left 93.9% of pairs forced. Removing the motor ganglion left 93.0% forced. The method shows how much freedom a count control leaves. It does not establish biological randomness or function. The data concern one animal and putative electrical contacts. The package contains source tables, label audits, enumeration and optimization code, provenance, results and figures.

connectome · Ciona intestinalis · gap junctions · chemical synapses · exact enumeration · constrained graphs · forced edges

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References

8
  1. usesdoi:10.7554/eLife.16962

    We analyze the released chemical and putative gap contact tables and cell metadata from one larva.

  2. usesdoi:10.7554/eLife.16962.040

    Version 1 of Figure 16 source data 1 supplies the chemical depth matrix.

  3. usesdoi:10.7554/eLife.16962.041

    Version 1 of Figure 16 source data 2 supplies the putative gap depth table.

  4. usesdoi:10.7554/eLife.16962.010

    Version 1 of Figure 3 source data 1 supplies cell identity and side.

  5. usesdoi:10.7554/eLife.16962.005

    Figure 1 source data 1 supplies cell names and class definitions for the label audit.

  6. doi:10.1371/journal.pcbi.1001066

    Prior work compared chemical and electrical connectome structure in C. elegans.

  7. doi:10.1016/j.neuron.2013.12.029

    Prior physiological work tested common-neighbor structure across electrical and chemical networks in rat cerebellum.

  8. Contact area controls reduced excess overlap of electrical and two-way chemical links in JSH and N2U maps of 175 neurons sci:sha256:ab09563dcf6eb2f2dc84925fc5afcbe60cefca57cd3332521d5d852d1de84927

    This study shows why structural constraints matter for mixed-link comparisons. Our analysis uses a different species, statistic and exact control. No code or graph draws are reused.

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