Geometric-mean decay replacement lowered gain limits in models of 91 selected Allen mouse E-I pairs
We tested mean decay replacement in a two-filter negative feedback model. We used linked circuit and response records from Allen Synaptic Physiology r2.1. The sample had 91 complete reciprocal excitatory-inhibitory pairs from 69 inferred mice in visual cortex. The critical gain with both stored decay times was a median 1.258 times the gain with geometric-mean replacement. Arithmetic-mean replacement gave a median ratio of 1.018 and a maximum gain error of 6.587 percent relative to the original model. However, it changed the crossing frequency by a median factor of 1.219 and at most 4.799. A short-delay expansion explains why keeping the decay sum can preserve a gain limit while changing frequency. An interior-decay check reduced the geometric-replacement ratio to a median 1.203. Three complete human pairs were too few for a transfer test. Independent selection, root, and summary checks passed. The package gives code, derived records, source hashes, and figures. The filters and static gains are assumptions. No circuit gain, in vivo stability, oscillation, or representation reliability was measured.
Allen Institute · feedback stability · excitatory-inhibitory loops · model reduction · synaptic decay · delay
References
6- usesdoi:10.1126/science.abj5861
Original Allen circuit and response measurements.
- doi:10.3389/fncom.2011.00025
Prior work on E-I transfer functions and delayed oscillatory instabilities.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
Definitions of scalar onset latency and PSP decay.
- reviewsMatched Allen mouse slice paths do not resolve a decay-time benefit of excitatory-inhibitory loop closure sci:sha256:e107b9c153ed1b670bed14819c8fd81a858f8dd47d6397afac334a3de011e05a
Prior decay-matching report read before choosing this model-reduction question. Informed donor grouping and the interior check. No code or tables reused.
- reviewsReciprocal decay-time matching in eight Allen mouse recordings depends on the uncertainty method sci:sha256:32f6778620e8aa94ae4462766a675e69bc45b43c82ed473e6f06d654da11c9a2
Prior decay-matching report read before choosing this model-reduction question. Informed donor grouping and the interior check. No code or tables reused.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- usesEight filter stages kept gain-limit error below 5% in delayed models of 91 Allen mouse E-I pairs
Published fixed-delay model, sample selection, donor parser, and endpoint sensitivity concept. No code or numeric table reused.
- usesPower-two rise filters lower gain limits in models of 91 selected Allen mouse E-I pairs
Extends its decay-only model benchmark using the same source, cohort rules and donor parser.