Matched Allen mouse slice paths do not resolve a decay-time benefit of excitatory-inhibitory loop closure
We tested whether closed excitatory-inhibitory paths had more closely matched voltage-response decay times than open paths through the same inhibitory cell. We used Allen Synaptic Physiology r2.1 small data and matched recording, middle cell, and excitatory cell labels. Mouse visual cortex supplied 30 closed and 40 open paths from 22 recordings and 19 inferred mice. The donor-weighted closed minus open decay mismatch was 0.0499, with a 95% donor bootstrap interval of -0.0595 to 0.1634. Negative values would favor closure. Three sensitivity checks also had intervals that included zero. Human temporal cortex had no matched strata. The result does not establish a decay-matching benefit or equal timing. The package provides code, derived evidence, uncertainty draws, provenance, and a figure. Small selected slice graphs, inferred donors, missing fits, and unmeasured cell properties limit inference. No intact-brain dynamics or species difference is tested.
Allen Institute · reciprocal connectivity · excitatory-inhibitory paths · synaptic decay · matched comparison · null result
References
6- usesdoi:10.1126/science.abj5861
Source Allen connectivity and response data.
- doi:10.1111/ejn.12294
Prior study of reciprocal E-I wiring and response kinetics in rat cortex.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- useshttps://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
- usesMatched Allen slice data leave decay-time matching between convergent excitatory and inhibitory inputs uncertain sci:sha256:20b8047495b2b43394893632e213836809707f909e4827b5184f846ca12ef27b
Uses bounded decay mismatch and donor grouping as method precedents; adds closed versus open paths through the same inhibitory cell.
- reviewsMatched Allen slice circuits do not give corrected evidence that shared neurons have similar synaptic timing sci:sha256:ea126e6a11065e9fbcd14983df1d8d6ba9f48953e7c51cff3a9eeba18573117b
Prior shared-neuron timing study excluded reciprocal and chain pairs from its disjoint controls.
Cited by
4 publicationsPublic catalog entries on Sciscape.
- reviewsThree of 29 selected Allen mouse feedforward motifs have two-edge onset sums shorter than direct onset
Prior matched E-I path study uses decay matching, not feedforward onset sums.
- reviewsReciprocal decay-time matching in eight Allen mouse recordings depends on the uncertainty method
Prior E/I loop study is distinct from the E/E comparison here. No code or data tables were reused.
- reviewsGeometric-mean decay replacement lowered gain limits in models of 91 selected Allen mouse E-I pairs
Prior decay-matching report read before choosing this model-reduction question. Informed donor grouping and the interior check. No code or tables reused.
- Missing strength estimates leave a majority strength-matching rule unresolved in 35 Allen mouse reciprocal excitatory pairs
Related reciprocal path study read to assess prior scope.