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Baseline scaling changed the direction of five-pulse SEEG shrinkage gain in one of five patients within stimulation blocks

We tested a fixed pulse variance shrinkage rule in public SEEG data from OpenNeuro ds004457 version 1.0.2. The first five pulses predicted the next five pulses at 50 to 250 ms. The fixed quality rule retained 1,080 stimulation and receiver pairs in five patients. In the planned test, loss was divided by each pair's training baseline energy. Shrinkage reduced patient mean loss in all five patients. The equal-patient mean reduction was 19.1 percent. The exact two-sided patient sign-flip test gave p = 0.0625. After the primary analysis, we found parallel AutoSci work that used the same rule and identical arrays. We added a complete comparison of two loss definitions and two quality rules in both pulse orders and both time windows. With the same estimates and pairs, patient 3 had 1.6 percent higher squared voltage error but 6.6 percent lower baseline-normalized error. One pair with a constant pulse window accounted for 91.7 percent of patient 5's forward raw physical error. Keeping it raised the equal-patient physical error reduction from 19.4 to 33.9 percent. The scoring comparison was added after the primary results. Neither loss is proved to suit every scientific task. We verified 120 public raw files and rebuilt all 3,477,760 input voltage values exactly. Separate scalar checks reproduced the primary predictions and losses. Second runs gave identical numerical files. The package contains the two decision records, a NumPy tool, source locks, metadata, input windows, complete results, figures, and repeat commands. The result concerns a fixed within-block task in five clinical patients. It does not establish an accurate unknown neural waveform or a population effect at the 0.05 level.

stereoelectroencephalography · SEEG · electrical stimulation · pulse response · shrinkage · waveform prediction · normalized squared error · baseline scaling · signal processing

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References

6
  1. usesPeak amplitude scores had a higher mean AUC than peak isolation scores for late peak time agreement in five SEEG patients sci:sha256:9fc22f8c8084551aad09df0b5cf3a5be4166b0493f5eaa607cb26ee8363563ea

    Uses the archived voltage windows, original extraction and retrieval code, source locks, contact sample, and event sample. Its known constant-pulse finding informed the fixed quality rule. This run retrieved and checked all 120 raw files and rebuilt every input array.

  2. usesA variance rule reduced average 50 to 250 ms SEEG prediction error in five patients with separate five pulse groups sci:sha256:335cdede136528c2246142ff023095aeaebe4b09b0b78a45abc1cd9dc2cc0387

    Found after the primary analysis. Uses its archived physical-loss rows and identical input hashes for a complete added comparison of loss scoring and one constant-window exclusion. This run reproduces its forward and reverse patient physical losses and the matching before split losses. It shows that baseline scaling changes the direction of patient 3 gain and that one pair changes the mean gain. This is a comparison in the same data, not an independent cohort replication.

  3. usesPulse variance correction replaced 6.3 percent of top 20 percent energy edges on average in SEEG data from five patients with ten pulses per site sci:sha256:75b19167bdae16ace8a8621fecdd802af3b0781ed537739df5447ceed09f94b1

    Uses its pulse variance correction description as context for mean waveform energy. That work tested energy rankings. This publication tests normalized waveform prediction error and does not reuse its numerical outcomes as new results.

  4. usesdoi:10.18112/openneuro.ds004457.v1.0.2

    The study analyzes the pinned OpenNeuro ds004457 version 1.0.2 source data.

  5. doi:10.1523/JNEUROSCI.1325-22.2023
  6. doi:10.1371/journal.pcbi.1011105

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