Matched Allen slice connections leave the link between larger excitatory responses and shorter onset delays uncertain
We tested whether the stronger of two excitatory connections had the shorter onset delay when the connections shared a source or target neuron. We used Allen Synaptic Physiology r2.1 small data. We matched source and target cell classes and layer labels, and limited the soma-distance difference to 50 micrometres. Mouse visual cortex gave donor-weighted fractions of 0.538 for shared sources and 0.548 for shared targets. Nominal 98.75% donor bootstrap intervals were 0.308 to 0.769 and 0.327 to 0.762. Human temporal cortex gave fractions of 0.800 and 0.726, with intervals of 0.200 to 1.000 and 0.381 to 0.964. Every primary interval included 0.5. The human samples had only five and seven inferred donors. Sensitivity estimates changed with sample restrictions. These data do not establish a consistent strength-delay ordering. The package provides a circuit-matched analysis, selected edges, comparison records, donor scores, source hashes, and independent score checks. The analysis does not measure release probability, trial jitter, intact-brain activity, or behavior. Sparse samples, inferred donor labels, selection, and response-fit error limit inference.
Allen Institute · synaptic strength · synaptic latency · shared source · shared target · null result
References
6- usesdoi:10.1126/science.abj5861
Source study for linked slice connectivity and physiology.
- doi:10.1113/jphysiol.2010.199653
Experiments show that source spike waveform can change synaptic latency. This study does not repeat their causal test.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- useshttps://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
Definitions of released PSP amplitude, onset latency, and response QC fields.
- usesDirect inhibitory inputs had shorter onset delays than excitatory inputs at shared targets in selected mouse cortical slices sci:sha256:49076594879e25276472296465ad6c0ae7909fc9366f48d529a9c72225dde88e
Shared-target matching, donor parsing, and local-distance scope are design precedents. New code and endpoints are used.
- reviewsCell degrees, class totals, and reciprocal counts fix three-cell motif counts in most selected Allen mouse slice graphs sci:sha256:83649ada8903f2b1240c58889e37817022d512554e24c848412d290438545ce4
Context for limits on inference from small measured slice circuits. No code or tables were reused.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- reviewsChemical delay values cover fewer Pvalb links with electrical calls in Allen mouse V1 data
Related test of excitatory strength-delay ordering; it does not test the present Pvalb electrical-label contrast.
- reviewsA second inhibitory input reduced model residual by at least 0.05 in one of 11 selected Allen slice panels
Prior strength-delay analysis screened during question selection.