Blocking internal axon-to-dendrite transfer kept all reachable pairs and increased 4.15 percent of shortest distances in a 2,952-neuron larval fly graph with all edges
We tested how a stated internal transfer rule changes routes in the larval fly connectome. We used all 2,952 neuron IDs in the released Data S1 matrices from Winding et al. Each neuron had axon and dendrite states. Chemical edges cost one step. Internal transfer from dendrite to axon cost zero. Internal transfer from axon to dendrite was blocked. Source and target compartments were free. With every positive recorded count, all 8,291,500 reachable ordered neuron pairs stayed reachable. Shortest distance increased for 343,715 pairs, or 4.15 percent. Mean distance increased from 3.2783 to 3.3215 chemical steps. At a two-step limit, the compartment graph missed 46,259 of 1,823,803 pairs reached in the neuron graph. Removing chemical self edges changed no pair distance. In the sensory-to-output subset, 1.57 percent of reachable-pair distances increased. Higher count cutoffs changed both reachability and the effect size. The new contribution is an exact route census and a reproducible tool for a stated compartment assumption. The strict transfer rule is not measured physiology. One fixed specimen, annotation limits, absent synaptic signs, and free endpoint compartments limit the result. The package preserves code, source hashes, all distance arrays, result tables, figures, and repeat instructions.
Drosophila larva · connectome · axon · dendrite · compartment graph · shortest paths · reachability · reproducible analysis
References
5- usesdoi:10.1126/science.add9330
We analyze the four compartment count matrices in Data S1 and neuron classes in Data S2. The supporting files fix the mirror URL, Git commit and SHA-256.
- doi:10.7554/eLife.12059
Prior work described connectome graphs with subcellular compartments.
- doi:10.1073/pnas.2320177121
Prior work measured communication and shortest paths in the larval fly neuron graph.
- doi:10.1016/j.cub.2021.11.056
Adult fly recordings and models show electrical differences between arbors and passive transfer between them. This motivates a sensitivity analysis; it does not prove our strict transfer rule.
- The union of two adult C. elegans brain maps gave paths of at most two edges for 1,102 neuron pairs with no such path in either map sci:sha256:fa0ea4c43e02533a5f18b5a255a13297792c2b49c443ef165f63ecefeeababae
Related SCI work showed that pooling worm specimens can change short routes. We do not reuse its code or numerical data.
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