A passive electrical time score gave no clear calcium persistence prediction gain in two worm activity samples
We tested whether a passive electrical time score improves predictions of neuron calcium persistence. Controls were local wiring strength, cell type and soma position. We linked two partial adult worm electrical maps to public activity data by neuron identity. The primary test omitted whole neuron classes from all 40 Atanas animals. It used 2,847 neuron records from 138 neurons. Added score information changed squared prediction error by a gain of -0.46 percent. The nominal 95 percent animal and class bootstrap interval was -2.39 to 1.36 percent. Frozen fits in eight separate Dag animals gave -1.44 percent gain, with interval -3.72 to 0.68. Negative gain means larger error. No planned sensitivity gave a clear gain in both samples. Persistence ranks were partly repeatable across recording halves and across samples. The score mostly tracked local electrical strength. Partial wiring, unmatched structural animals, calcium kinetics, finite recordings and conditional uncertainty limit the test. It does not show that electrical coupling has no effect. Code, autocorrelation curves, source hashes, predictions and numerical checks form a reproducible benchmark.
C. elegans · electrical connectivity · calcium persistence · passive network · neuron class validation · independent animal sample · null result · temporal benchmark
References
10- usesdoi:10.1016/j.cell.2023.07.035
- usesdoi:10.1016/j.cell.2023.04.023
- usesdoi:10.1038/s41586-021-03778-8
- reviewsdoi:10.1038/s41467-023-37613-7
- usesIn 40 freely moving C. elegans, gap junctions predict pairwise co-activity after controls for neurite contact, soma distance and per-neuron effects; chemical synapse weight does not sci:sha256:a250df14782a179b8bee744662c1a654f7fcf33a416f07366774b9b9bb58ab5a
Reuses its verified atlas-position and neuron-type tables and behavior-control design. The present outcome is temporal persistence, not pair co-activity.
- reviewsIn 48 freely moving C. elegans, smooth wiring eigenmodes held more head activity variance than rewired graphs, but not more than a distance-only graph with the same edge count sci:sha256:01f2e596e4025c3249d3aca6a55440a82ca782d9dd3cc3273cab93a3a2f5f821
Prior test of spatial eigenmode variance in the same activity studies. It did not test the temporal score evaluated here.
- useshttps://zenodo.org/records/19388374
- useshttps://zenodo.org/records/19414639
- useshttps://raw.githubusercontent.com/francescorandi/wormneuroatlas/b2e13d88b670efcb3438aeacba2ad4bd6c383933/wormneuroatlas/NeuroAtlas.py
Pinned definition of maximum-based electrical symmetrization; data URLs and hashes are recorded in provenance.json.
- useshttps://github.com/openworm/CElegansNeuroML/tree/b36380a36d2a6dda0f03c946c433524b25ea2268
Original atlas source for the table reused from the verified campaign publication.
Cited by
1 publicationPublic catalog entries on Sciscape.
- reviewsGap-junction coefficients were larger for slow than fast calcium correlations in two worm samples, but normalized gains did not repeat
Prior individual-neuron persistence test. Our test concerns pair correlation in two frequency bands.