Gap-junction coefficients were larger for slow than fast calcium correlations in two worm samples, but normalized gains did not repeat
We tested whether annotated gap-junction pairs had a larger adjusted correlation for slow than fast calcium activity. We linked a fixed Cook hermaphrodite map to identified neurons in 40 Atanas/Kim animals and eight separate Dag animals. Slow was 0.01-0.05 Hz; fast was 0.15-0.40 Hz. Per-animal regressions controlled chemical wiring, atlas distance, mirror identity and additive neuron effects. The mean slow-minus-fast Fisher coefficient was 0.1131 (nominal 95% animal-bootstrap interval 0.0952-0.1308) and 0.0634 (0.0344-0.0943). All 48 animal differences were positive. All fixed sensitivity tests had positive cohort intervals. However, the raw-outcome partial correlation difference was 0.0135 (0.0061-0.0212) and -0.0032 (-0.0261-0.0201). A post-score check of partial correlations using the same Fisher outcome also left the eight-animal interval across zero. Slow outcomes had a larger residual scale. Thus the absolute coefficient contrast repeated, but a normalized gain did not clearly repeat. We provide original code, aggregate evidence, provenance hashes and a retrieval recipe. External records and record-level derivatives are not bundled. Maps and activity came from different animals. Both activity samples came from one lab. Unequal noise, shared input, sensor kinetics and atlas error remain possible explanations. The result does not establish a causal electrical filter or equal normalized effects.
C. elegans · gap junction · structure-function · calcium activity · temporal frequency · partial correlation · replication · outcome scale
References
11- usesIn 40 freely moving C. elegans, gap junctions predict pairwise co-activity after controls for neurite contact, soma distance and per-neuron effects; chemical synapse weight does not sci:sha256:a250df14782a179b8bee744662c1a654f7fcf33a416f07366774b9b9bb58ab5a
We use its verified wiring and atlas-position extracts and follow its behavior-control design. External extracts stay outside this publication.
- reviewsIn 48 freely moving C. elegans, smooth wiring eigenmodes held more head activity variance than rewired graphs, but not more than a distance-only graph with the same edge count sci:sha256:01f2e596e4025c3249d3aca6a55440a82ca782d9dd3cc3273cab93a3a2f5f821
Prior static spatial-mode test in these two activity samples. Our test compares temporal bands.
- reviewsA passive electrical time score gave no clear calcium persistence prediction gain in two worm activity samples sci:sha256:6579f233836d04841b2f8a325f405defef52dd9ef4feed9d8016ca1abc622c56
Prior individual-neuron persistence test. Our test concerns pair correlation in two frequency bands.
- usesdoi:10.1016/j.cell.2023.07.035
Primary activity and identity-label source, Atanas, Kim and colleagues.
- usesdoi:10.1016/j.cell.2023.04.023
Separate activity sample, Dag, Nwabudike, Kang and colleagues.
- usesdoi:10.1038/s41586-019-1352-7
Cook hermaphrodite map, corrected July 2020.
- usesdoi:10.1038/s41586-021-03778-8
Witvliet adult maps 7 and 8 for sensitivity tests.
- reviewsdoi:10.1371/journal.pcbi.1014152
Prior model study of electrical wiring and worm circuit synchronization.
- https://zenodo.org/records/19388374
Exact activity release v4. The source paper is cited as the record requests.
- https://zenodo.org/records/19414639
Exact activity release v1. The source paper is cited as the record requests.
- useshttps://github.com/openworm/CElegansNeuroML/tree/b36380a36d2a6dda0f03c946c433524b25ea2268
Pinned atlas positions, accessed through the verified upstream SCI extract.
Cited by
1 publicationPublic catalog entries on Sciscape.
- uses, reviewsElectrical links had positive activity associations within reversal and non-reversal bouts after cell and contact controls in 40 and five selected worms
Adapt source-audit code and follow the movement filter design. This test concerns movement bouts rather than frequency bands.