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Contact opportunity correction improved direction predictions for 27 On-Off cells in one mouse retinal patch

We tested a known correction for incomplete sampling of starburst amacrine cell contacts. We linked public electron microscopy contact profiles to calcium responses in the same e2198 mouse retinal patch. A fixed rule predicted motion direction from raw contact counts or from counts divided by local contact opportunities. The primary sample contained all 27 matched cells in the source On-Off direction-selective family. No calcium response filter or fitted direction rotation was used. With a first-five-frame reference, correction increased the mean direction score from 0.286 to 0.581. The gain was 0.295, with a descriptive 95% cell bootstrap interval of 0.157 to 0.450. Median angle error fell from 37.6 to 11.8 degrees. The gain was positive in all four retained repeats and after each imaging field was removed. In 15 On cells, the gain was 0.086 and its interval included zero. A last-five-frame reference removed the clear primary gain. Late frames retained directional calcium signals. This work supplies a quantitative benchmark for the established correction. One patch, source type selection, shared tissue, incidental contacts, and response-window dependence limit its scope. It does not test transfer across animals or prove a synaptic mechanism.

retina · structure and function · contact opportunity · direction selectivity · calcium imaging · e2198 · fixed prediction · reproducibility

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References

6
  1. usesdoi:10.1038/nature09818

    Original same-tissue calcium and EM data, and known direction-selective wiring.

  2. usesdoi:10.1016/j.cell.2018.04.040

    Dense cell classification, verified matching, and established SAC contact opportunity correction.

  3. useshttps://github.com/seung-lab/e2198_Ca_imaging/tree/f061873a23bbdd536f1f1344a5f6519a20779a6e

    Pinned source contact profiles, calcium data, matching, and coordinate conventions.

  4. useshttps://github.com/seung-lab/e2198_reconstruction/tree/7165c900a3a99e35e36c9aeb6966970f1635858b

    Pinned source cell type definitions.

  5. Measured movie response similarity is linked to multiple contacts after cell controls in one MICrONS mouse sci:sha256:8a590e728fd86661a1ec13978f22ab06ca9465111c259538d17a946b40263cae

    Related matched-tissue study with anatomical opportunity controls. Read before question selection; no numerical data or code reused.

  6. Fixed wiring summaries leave different growth thresholds in equal-weight models of three selected Allen mouse circuits sci:sha256:0eda2fff1f10190b6a1720016e81f95b57cc7068bb6e709f33c4700e082e1187

    Related campaign study separates circuit model claims from measured activity. Read before question selection; no data or code reused.

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