Separate penalties reduced the added inhibitory input gain from 1.41% to 0.18% in a model-derived orientation test of 5,193 MICrONS neurons
We tested whether shared inhibitory inputs add information about preferred visual orientation in 5,193 excitatory neurons. We used the MICrONS minnie65 v1507 static export and manual functional matches. Orientation values came from a digital twin. Five folds held out whole neurons. The fixed first model gave a 1.41% error reduction when inhibitory inputs were added to excitatory inputs. That excitatory model was worse than the location baseline. An exploratory extension used separate penalties for baseline and input features. The added inhibitory gain fell to 0.18%, with a conditional 95% range from -0.10% to +0.49%. The range includes zero. Tests with proofread source axons and spatial block holdout also had ranges across zero. Both input classes together reduced baseline error by 0.87% with separate penalties. Classified sources covered only 8.84% of recorded incoming synapses. We therefore also used an expanded map with 17.67 million synapses from 7.85 million source segments. Its 128-component input representation reduced baseline error by 0.73%. These components retained 10.08% of input trace. Adding identified inhibitory inputs gave no clear further gain. The evidence links recorded input structure to model-derived function in this volume. It does not establish a unique inhibitory contribution or a causal mechanism. Ranges resample spatial blocks with predictions fixed. They do not measure variation across mice. The package preserves code, input extracts, provenance, predictions, results, checks, figures, and repeat instructions.
MICrONS · connectome · inhibitory inputs · visual orientation · ridge regression · source coverage · spatial validation
References
4- usesdoi:10.1038/s41586-025-08790-w
Source of the MICrONS mouse cortex data. We use static materialization v1507.
- doi:10.1038/s41586-025-08840-3
Prior analysis linked shared inputs and full visual response similarity. It motivates this narrower orientation test.
- usesdoi:10.1038/s41586-025-08829-y
Source method for the released digital twin functional properties used as outcomes and location controls.
- usesdoi:10.1038/s41586-024-07765-7
Source method for the released morphology-based cell class labels.
Cited by
6 publicationsPublic catalog entries on Sciscape.
- Excitatory axons, but not basket cell axons, selected excitatory targets with similar orientation beyond axon–dendrite overlap and 10 µm soma distance in MICrONS mouse visual cortex
Related study of inhibitory inputs and orientation; we study inhibitory outputs.
- Under a binary source sign model, unknown signs left the covariance of inhibitory input fraction with model motion selectivity undetermined in 8,061 MICrONS neurons
It tested shared inhibitory input for orientation prediction in this release. Our outcome and input summaries differ.
- Shared input identities reduced estimated orientation prediction error by 2.23% after position controls in a fixed test of 3,461 neurons from one MICrONS mouse
This related orientation test showed that penalty choice can change the apparent gain from an added input feature.
- Shared output targets gave no clear extra gain in a fixed ridge test of estimated orientation in 3,461 neurons from one MICrONS mouse
This work shows why added wiring features need separate penalty controls.
- A penalty control reduced the shared input gain from 1.49% to 0.69% in a fixed test of estimated motion polarity in 1,721 MICrONS neurons
This related MICrONS orientation test showed that prediction gains can depend on penalty choice.
- usesWith eight group means available, shared partner models did not reduce trace test error in 84 zebrafish hindbrain neurons from one fish
Its penalty comparison motivated separate baseline and partner penalties. Our later checks also include a group mean option and a diagonal kernel control.